Index

A

ABFile (class in NEDAS.models.topaz.abfile) ABFileArchv (class in NEDAS.models.topaz.abfile) ABFileBathy (class in NEDAS.models.topaz.abfile) ABFileForcing (class in NEDAS.models.topaz.abfile) ABFileGrid (class in NEDAS.models.topaz.abfile) ABFileRelax (class in NEDAS.models.topaz.abfile) ABFileRelaxZ (class in NEDAS.models.topaz.abfile) ABFileRestart (class in NEDAS.models.topaz.abfile) ABFileRiver (class in NEDAS.models.topaz.abfile) ABFileRmu (class in NEDAS.models.topaz.abfile) Abort() (NEDAS.utils.parallel.DummyComm method) acquire_file_lock() (NEDAS.utils.parallel.Comm method) adapt_dt (NEDAS.models.qg.python.model.QGModel attribute) adaptive_post_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.inflation.Inflation method) adaptive_prior_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.inflation.Inflation method) add_colorbar() (in module NEDAS.utils.graphics) add_fields_for_variable() (NEDAS.core.state_info.StateInfo method) add_obs_record() (NEDAS.core.obs_info.ObsInfo method) add_perturb() (NEDAS.core.perturb.PerturbField method) AdditiveUpdator (class in NEDAS.assim_tools.updators.additive) adjust_ax_size() (in module NEDAS.utils.graphics) adjust_dp() (in module NEDAS.models.topaz.v5.postproc) adjust_ice_variables() (in module NEDAS.models.topaz.v5.cice_utils) advance_time() (in module NEDAS.models.vort2d.util) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) AFile (class in NEDAS.models.topaz.abfile) AFileError aice_thresh (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) allgather() (NEDAS.utils.parallel.DummyComm method)

allreduce() (NEDAS.utils.parallel.DummyComm method) analysis_dir() (NEDAS.core.file_system.FileSystem method) anchor (NEDAS.config.config.Config attribute) apply_AR1_perturb() (in module NEDAS.models.nextsim.dg.perturb) apply_ensemble_transform() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core) apply_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.inflation.Inflation method) apply_perturb() (in module NEDAS.models.nextsim.dg.perturb) ArgoObs (class in NEDAS.datasets.ifremer.argo) (class in NEDAS.datasets.ifremer.argo.argo_obs) arrowhead_xy() (in module NEDAS.utils.graphics) asdict() (NEDAS.core.types.ErrorModel method) (NEDAS.core.types.FieldRecord method) (NEDAS.core.types.ObsRecord method) (NEDAS.core.types.VarDesc method) assign_obs() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.assimilator.Assimilator method) assign_obs_to_tiles() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) assim_mode (NEDAS.assim_tools.assimilators.batch.BatchAssimilator attribute) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator attribute) (NEDAS.core.assimilator.Assimilator attribute) assimilate() (NEDAS.core.assimilator.Assimilator method) assimilation_algorithm() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.assimilator.Assimilator method) Assimilator (class in NEDAS.core.assimilator) assimilator (NEDAS.core.context.Context attribute) assimilator_def (NEDAS.config.config.Config attribute) atmos_forcing_path (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) Att_Res_UNet (class in NEDAS.models.qg.fortran.emulator.netutils) attention_block() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method)

B

backward_obs() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.transform.Transform method) backward_state() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.transform.Transform method) Barrier() (NEDAS.utils.parallel.DummyComm method) basedir (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) basename (NEDAS.models.topaz.abfile.ABFile property) BatchAssimilator (class in NEDAS.assim_tools.assimilators.batch) bcast() (NEDAS.utils.parallel.DummyComm method) bcast_by_root() (in module NEDAS.utils.parallel) beta (NEDAS.models.qg.python.model.QGModel attribute) (NEDAS.models.qg.python.qg_python_model.QGPythonModel attribute)

BetzyJobSubmitter (class in NEDAS.job_submitters.betzy) BFileError binfile_name() (NEDAS.io_backends.offline.OfflineIO method) blkdat() (in module NEDAS.models.topaz.v5.namelist) bminmax() (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRmu method) bool_str() (in module NEDAS.models.topaz.v4.namelist) (in module NEDAS.models.topaz.v5.namelist) (in module NEDAS.models.wrf.namelist) bool_str_fortran() (in module NEDAS.models.topaz.v5.namelist) bot_drag (NEDAS.models.qg.python.model.QGModel attribute) by_rank() (in module NEDAS.utils.parallel)

C

c (NEDAS.core.dataset.Dataset property) (NEDAS.core.model.Model property) (NEDAS.core.scheme.Scheme property) call_method() (NEDAS.core.io_backend.IOBackend method) (NEDAS.io_backends.offline.OfflineIO method) (NEDAS.io_backends.online.OnlineIO method) call_stack (NEDAS.config.config.Config attribute) (NEDAS.utils.progress.Progress attribute) call_stack_max_level (NEDAS.config.config.Config attribute) (NEDAS.utils.progress.Progress attribute) change_resolution_level() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) character_length (NEDAS.config.config.Config attribute) check_cycle_complete() (NEDAS.schemes.filter.FilterAnalysisScheme method) check_dimensions() (NEDAS.models.topaz.abfile.ABFile method) check_interactive() (NEDAS.core.context.Context method) check_job_status() (NEDAS.job_submitters.gricad.GricadJobSubmitter method) (NEDAS.job_submitters.oar.OARJobSubmitter method) check_minmax() (NEDAS.models.topaz.abfile.ABFile class method) check_notebook() (NEDAS.core.context.Context method) check_parallel_io() (NEDAS.utils.parallel.Comm method) check_resources() (NEDAS.job_submitters.betzy.BetzyJobSubmitter method) (NEDAS.job_submitters.hpc.HPCJobSubmitter method) cleanup_file_locks() (NEDAS.utils.parallel.Comm method) close() (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.AFile method) close_file() (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) cntr (NEDAS.models.qg.python.model.QGModel attribute) coarsen() (in module NEDAS.utils.spatial_operation) (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) coarsen_field() (in module NEDAS.utils.spatial_operation) coarsen_mask() (in module NEDAS.utils.spatial_operation)

collect_fields() (NEDAS.core.perturb.Perturbation method) collect_obs_seq() (NEDAS.core.obs.Obs method) collect_prior_fields() (NEDAS.core.state.State method) collect_scalar_variables() (NEDAS.core.state.State method) cols (NEDAS.config.config.Config attribute) Comm (class in NEDAS.utils.parallel) comm (NEDAS.core.context.Context attribute) comm_mem (NEDAS.core.context.Context attribute) comm_rec (NEDAS.core.context.Context attribute) complete_err_cross_corr_matrix() (NEDAS.core.obs_info.ObsInfo method) compute_covariance() (NEDAS.assim_tools.covariance.ensemble.EnsembleCovariance method) compute_increment() (NEDAS.assim_tools.updators.additive.AdditiveUpdator method) (NEDAS.core.updator.Updator method) Config (class in NEDAS.config.config) config (NEDAS.core.file_system.FileSystem attribute) (NEDAS.core.scheme.Scheme attribute) ConformalMapping (class in NEDAS.models.topaz.confmap) Context (class in NEDAS.core.context) convert() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) convert_notation() (in module NEDAS.config.parse_config) convolve() (in module NEDAS.utils.multiscale) copy_file() (NEDAS.core.file_system.FileSystem method) copy_group() (in module NEDAS.models.nextsim.dg.slicing_nc) copy_time_sliced_nc_file() (in module NEDAS.models.nextsim.dg.slicing_nc) count_lines_in_file() (in module NEDAS.utils.progress) count_num_fields() (NEDAS.core.perturb.Perturbation method) covariance_def (NEDAS.config.config.Config attribute) covariance_lookup() (in module NEDAS.assim_tools.covariance.ensemble) cross_corr (NEDAS.core.types.ErrorModel attribute) crps() (in module NEDAS.diag.metrics.spectral) Cs2SmosObs (class in NEDAS.datasets.cs2smos) (class in NEDAS.datasets.cs2smos.cs2smos_obs) current_task (NEDAS.core.context.Context property) cycle_dir() (NEDAS.core.file_system.FileSystem method) cycle_period (NEDAS.config.config.Config attribute) cyclic (NEDAS.grid.grid_1d.Grid1D attribute) cyclic_dim (NEDAS.grid.grid_2d_base.Grid2DBase attribute)

D

data (NEDAS.core.obs.Obs attribute) (NEDAS.core.state.State attribute) Data_generator (class in NEDAS.models.qg.fortran.emulator.netutils) Dataset (class in NEDAS.core.dataset) dataset_def (NEDAS.config.config.Config attribute) dataset_dir (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) dataset_name (NEDAS.core.dataset.Dataset attribute) dataset_src (NEDAS.core.types.ObsRecord attribute) datasets (NEDAS.core.context.Context attribute) datetojul() (in module NEDAS.models.topaz.time_format) dayfor() (in module NEDAS.models.topaz.time_format) DAYS_SEARCH_TOLERANCE (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) dealiasing (NEDAS.models.qg.python.model.QGModel attribute) debug (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) (NEDAS.utils.progress.Progress attribute) debug_message (NEDAS.core.context.Context property) decompose_obs (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass attribute) DEFORM_ERR_STD (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) DEFORM_MAX (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) deltc (NEDAS.models.qg.python.model.QGModel attribute) depressT (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) destagger() (in module NEDAS.models.topaz.model_grid) dg_comp (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) diag (NEDAS.config.config.Config attribute) diagnose() (NEDAS.schemes.filter.FilterAnalysisScheme method) Diagnostics (class in NEDAS.core.diag) dimmer() (NEDAS.utils.progress.Formatter method) directories (NEDAS.config.config.Config attribute) displace() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) diss (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) distance() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) distribute_diag_tasks() (NEDAS.core.diag.Diagnostics method) distribute_mem_tasks() (NEDAS.core.context.Context method) distribute_obs_tasks() (NEDAS.core.obs.Obs method) distribute_partitions() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.assimilator.Assimilator method) distribute_perturb_tasks() (NEDAS.core.perturb.Perturbation method) distribute_state_tasks() (NEDAS.core.state.State method) distribute_tasks() (in module NEDAS.utils.parallel) diy() (in module NEDAS.models.topaz.time_format) downsample_block() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method)

draw_line() (in module NEDAS.utils.graphics) draw_patch() (in module NEDAS.utils.graphics) draw_reference_vector_legend() (in module NEDAS.utils.graphics) DRIFT_ERR_STD (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) DRIFT_MAX (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) dst_grid (NEDAS.grid.grid_1d.Grid1D property) (NEDAS.grid.grid_2d_base.Grid2DBase property) dt (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.qg.python.model.QGModel attribute) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) dt_hours (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData attribute) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData attribute) dt_max (NEDAS.models.qg.python.model.QGModel attribute) dt_step (NEDAS.models.qg.python.model.QGModel attribute) dt_tune (NEDAS.models.qg.python.model.QGModel attribute) dtype (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) DummyComm (class in NEDAS.utils.parallel) dump_config() (NEDAS.core.context.Context method) dump_yaml() (NEDAS.config.config.Config method) dx (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) dxdt() (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) dy (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute)

E

E (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) e_sn (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) e_vert (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) e_we (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) EAKFAssimilator (class in NEDAS.assim_tools.assimilators.EAKF) (class in NEDAS.assim_tools.assimilators.EAKF.core) EcmwfForecastData (class in NEDAS.datasets.ecmwf.forecast) (class in NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data) ens_init_dir (NEDAS.core.model.Model attribute) ens_run_strategy (NEDAS.core.model.Model attribute) ensemble_covariance() (in module NEDAS.assim_tools.covariance.ensemble) ensemble_forecast() (NEDAS.schemes.filter.FilterAnalysisScheme method) ensemble_transform_weights() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core)

EnsembleCovariance (class in NEDAS.assim_tools.covariance.ensemble) ensure_list() (in module NEDAS.utils.conversion) era5_path (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) ERA5Data (class in NEDAS.datasets.ecmwf.era5) (class in NEDAS.datasets.ecmwf.era5.era5data) err (NEDAS.core.types.ObsRecord attribute) err_type (NEDAS.core.types.FieldRecord attribute) err_types (NEDAS.core.obs_info.ObsInfo attribute) (NEDAS.core.state_info.StateInfo attribute) ErrorModel (class in NEDAS.core.types) ETKFAssimilator (class in NEDAS.assim_tools.assimilators.ETKF) (class in NEDAS.assim_tools.assimilators.ETKF.core) execute_command (NEDAS.core.job_submitter.JobSubmitter property) (NEDAS.job_submitters.local.LocalJobSubmitter property) (NEDAS.job_submitters.macos.MacOSJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) exponential_func() (in module NEDAS.assim_tools.localization.distance_based) external_call() (NEDAS.core.scheme.Scheme method)

F

F (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.qg.python.model.QGModel attribute) (NEDAS.models.qg.python.qg_python_model.QGPythonModel attribute) Fe (NEDAS.models.qg.python.model.QGModel attribute) featname2tuple() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) fft2() (in module NEDAS.utils.fft_lib) fftwn() (in module NEDAS.utils.fft_lib) fice_thresh (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) field_times (NEDAS.models.topaz.abfile.ABFileForcing property) fieldkeys (NEDAS.models.topaz.abfile.ABFileArchv attribute) (NEDAS.models.topaz.abfile.ABFileForcing attribute) (NEDAS.models.topaz.abfile.ABFileGrid attribute) (NEDAS.models.topaz.abfile.ABFileRelax attribute) (NEDAS.models.topaz.abfile.ABFileRelaxZ attribute) (NEDAS.models.topaz.abfile.ABFileRestart attribute) (NEDAS.models.topaz.abfile.ABFileRiver attribute) fieldlevels (NEDAS.models.topaz.abfile.ABFileArchv property) (NEDAS.models.topaz.abfile.ABFileRestart property) fieldnames (NEDAS.models.topaz.abfile.ABFile property) FieldRecord (class in NEDAS.core.types) fields (NEDAS.core.state_info.StateInfo attribute) (NEDAS.models.topaz.abfile.ABFile property) fields_post (NEDAS.core.state.State attribute) fields_prior (NEDAS.core.state.State attribute) fields_z (NEDAS.core.state.State attribute) filename() (in module NEDAS.models.noresm) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs method) (NEDAS.datasets.ifremer.argo.ArgoObs method) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs method) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs method) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs method) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method)

files (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) FileSystem (class in NEDAS.core.file_system) filt_tune (NEDAS.models.qg.python.model.QGModel attribute) filter() (NEDAS.schemes.filter.FilterAnalysisScheme method) filter_exp (NEDAS.models.qg.python.model.QGModel attribute) filter_iter() (NEDAS.schemes.filter.FilterAnalysisScheme method) filter_type (NEDAS.models.qg.python.model.QGModel attribute) FilterAnalysisScheme (class in NEDAS.schemes.filter) finalize() (NEDAS.utils.parallel.Comm method) find_grid_index() (in module NEDAS.models.noresm.proj) find_index() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) find_keyword_in_file() (in module NEDAS.utils.progress) find_record() (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileRestart method) find_time_index() (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) fix_zsin_profile() (in module NEDAS.models.topaz.v5.cice_utils) forc_coef (NEDAS.models.qg.python.model.QGModel attribute) forc_corr (NEDAS.models.qg.python.model.QGModel attribute) forcing() (in module NEDAS.models.vort2d.util) forcing_dt (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) forcing_file (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) forcing_frc (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) forday() (in module NEDAS.models.topaz.time_format) forecast_dir() (NEDAS.core.file_system.FileSystem method) forecast_period (NEDAS.config.config.Config attribute) (NEDAS.core.model.Model attribute) ForecastScheme (class in NEDAS.schemes.forecast) Formatter (class in NEDAS.utils.progress) formatter (NEDAS.utils.progress.Progress attribute) forward_obs() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.transform.Transform method) forward_state() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.transform.Transform method) fs (NEDAS.core.context.Context attribute) fullspec() (in module NEDAS.models.qg.fortran.util)

G

gaspari_cohn_func() (in module NEDAS.assim_tools.localization.distance_based) gather() (NEDAS.utils.parallel.DummyComm method) gating_signal() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) gaussian() (in module NEDAS.utils.random_perturb) gen (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) gen_perturb() (in module NEDAS.models.nextsim.dg.perturb) generate_init_ensemble() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) generate_initial_condition() (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) generate_obs_network() (NEDAS.core.dataset.Dataset method) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs method) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs method) (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs method) (NEDAS.datasets.synthetic.SyntheticObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) generate_perturb() (NEDAS.core.perturb.PerturbField method) generate_truth() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) generate_viewer_html() (in module NEDAS.diag.plot.analysis_increments) (in module NEDAS.diag.plot.ensemble_states) (in module NEDAS.diag.plot.observations) geostrophic_perturb() (in module NEDAS.models.nextsim.dg.forcing) get_assimilator() (in module NEDAS.assim_tools.assimilators) get_boundary_nodes() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) get_cat_id() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_cmap() (in module NEDAS.utils.graphics) get_cols() (NEDAS.core.context.Context method) get_coords() (NEDAS.models.nextsim.v1.gmshlib.MeshElement method) get_corners() (NEDAS.grid.grid_regular.RegularGrid method) get_covariance() (in module NEDAS.assim_tools.covariance) get_data_traj_pairs() (in module NEDAS.datasets.rgps.utils) get_dataset_class() (in module NEDAS.datasets) get_deform_div() (in module NEDAS.datasets.rgps.utils) get_deform_shear() (in module NEDAS.datasets.rgps.utils) get_deform_vort() (in module NEDAS.datasets.rgps.utils) get_deformation_elems() (in module NEDAS.models.nextsim.v1.drift_utils) get_deformation_nodes() (in module NEDAS.models.nextsim.v1.drift_utils) get_deformation_on_triangulation() (in module NEDAS.models.nextsim.v1.drift_utils) get_depth() (in module NEDAS.models.topaz.model_grid) get_diag_var() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) get_error_scale_factor() (in module NEDAS.utils.multiscale) get_fields() (NEDAS.models.topaz.abfile.ABFileArchv method) get_file_list() (in module NEDAS.diag.misc.convert_output.convert_output) get_fname_daterange() (in module NEDAS.models.nextsim.dg.forcing) get_forcing_filename() (in module NEDAS.models.nextsim.dg.forcing) get_grid_point() (NEDAS.models.topaz.confmap.ConformalMapping method) get_inflation_func() (in module NEDAS.assim_tools.inflation) get_info() (in module NEDAS.models.nextsim.v1.bin_io) get_io_backend() (in module NEDAS.io_backends) get_job_id() (NEDAS.job_submitters.oar.OARJobSubmitter method) get_layer_depths() (in module NEDAS.models.qg.python.strat) get_localization_funcs() (in module NEDAS.assim_tools.localization) get_mean_ssh() (in module NEDAS.models.topaz.model_grid) get_model_class() (in module NEDAS.models) get_model_files() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_model_fld_z_on_grid() (NEDAS.core.obs.Obs method) get_mstr() (NEDAS.core.dataset.Dataset method) (NEDAS.core.model.Model method) get_neighbor_nodes() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) get_ocean_surf_height() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_ocean_surf_height_anomaly() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_ocean_surf_temp() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_prev_time_from_nc() (in module NEDAS.models.nextsim.dg.forcing)

get_psi_grid() (NEDAS.models.qg.python.model.QGModel method) get_psiq() (in module NEDAS.models.qg.python.strat) get_pv() (NEDAS.models.qg.python.model.QGModel method) get_q_grid() (NEDAS.models.qg.python.model.QGModel method) Get_rank() (NEDAS.utils.parallel.DummyComm method) get_record_id_lookup() (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) get_ref_z() (NEDAS.core.obs.Obs method) get_restart_dir() (NEDAS.schemes.filter.FilterAnalysisScheme method) get_restart_filename() (in module NEDAS.models.nextsim.dg.restart) get_scale_component() (in module NEDAS.utils.multiscale) get_scale_component_convolve() (in module NEDAS.utils.multiscale) get_scale_component_spec_bandpass() (in module NEDAS.utils.multiscale) get_scaled_wn() (in module NEDAS.models.vort2d.util) get_scheme() (in module NEDAS.schemes) get_seaice_conc() (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_seaice_deform_div() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_deform_shear() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_deform_vort() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_drift() (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs method) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) get_seaice_thick() (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_sig_in_gaussian() (in module NEDAS.utils.random_perturb) Get_size() (NEDAS.utils.parallel.DummyComm method) get_snow_thick() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) get_task_list() (in module NEDAS.diag.misc.convert_output.convert_output) (in module NEDAS.diag.plot.analysis_increments) (in module NEDAS.diag.plot.ensemble_states) (in module NEDAS.diag.plot.observations) get_task_opts() (NEDAS.schemes.filter.FilterAnalysisScheme method) (NEDAS.schemes.forecast.ForecastScheme method) get_time_from_nc() (in module NEDAS.models.nextsim.dg.forcing) get_time_index() (in module NEDAS.models.nextsim.dg.forcing) get_timer_msg() (NEDAS.utils.progress.Progress method) get_topaz_grid() (in module NEDAS.models.topaz.model_grid) get_traj_pairs() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_transform_funcs() (in module NEDAS.assim_tools.transforms) get_triangulation() (in module NEDAS.datasets.rgps.utils) get_tripint() (in module NEDAS.models.qg.python.strat) get_tstr() (NEDAS.core.dataset.Dataset method) (NEDAS.core.model.Model method) get_u_grid() (NEDAS.models.qg.python.model.QGModel method) get_updator() (in module NEDAS.assim_tools.updators) get_v_grid() (NEDAS.models.qg.python.model.QGModel method) get_vapmix() (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) get_velocity() (in module NEDAS.datasets.rgps.utils) (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_velocity_from_press() (in module NEDAS.utils.random_perturb) get_velocity_gradients() (in module NEDAS.datasets.rgps.utils) get_vmodes() (in module NEDAS.models.qg.python.strat) get_vortex_intensity() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_vortex_position() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_vortex_size() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_wn() (in module NEDAS.models.qg.fortran.util) (in module NEDAS.utils.fft_lib) gind2ll() (NEDAS.models.topaz.confmap.ConformalMapping method) global_obs_list() (NEDAS.core.obs.Obs method) GmshBoundary (class in NEDAS.models.nextsim.v1.gmshlib) gradx() (in module NEDAS.utils.spatial_operation) gradx2() (in module NEDAS.utils.spatial_operation) gradxy() (in module NEDAS.utils.spatial_operation) grady() (in module NEDAS.utils.spatial_operation) grady2() (in module NEDAS.utils.spatial_operation) GricadJobSubmitter (class in NEDAS.job_submitters.gricad) Grid (class in NEDAS.grid.grid) grid (NEDAS.core.context.Context attribute) (NEDAS.core.model.Model attribute) (NEDAS.core.perturb.PerturbField attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) Grid1D (class in NEDAS.grid.grid_1d) Grid2DBase (class in NEDAS.grid.grid_2d_base) grid2spec() (in module NEDAS.models.qg.fortran.util) (in module NEDAS.models.qg.python.spectral) grid_def (NEDAS.config.config.Config attribute) grid_info() (in module NEDAS.models.noresm) grid_orig (NEDAS.core.context.Context attribute)

H

h2t() (in module NEDAS.utils.conversion) halfspec() (in module NEDAS.models.qg.fortran.util) hcorr (NEDAS.core.types.ErrorModel attribute) hi_cate() (in module NEDAS.models.topaz.v5.cice_utils) hice_impact (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute)

horizontal_interp() (NEDAS.core.obs.Obs method) HPCJobSubmitter (class in NEDAS.job_submitters.hpc) hroi (NEDAS.core.types.ObsRecord attribute) huge (NEDAS.models.topaz.abfile.AFile attribute)

I

ice_in() (in module NEDAS.models.topaz.v5.namelist) Identity (class in NEDAS.assim_tools.transforms.identity) idm (NEDAS.models.topaz.abfile.ABFile property) (NEDAS.models.topaz.abfile.AFile property) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) idum (NEDAS.models.qg.python.model.QGModel attribute) iexpt (NEDAS.models.topaz.abfile.ABFileArchv property) ifft2() (in module NEDAS.utils.fft_lib) impact_on_state (NEDAS.core.types.ObsRecord attribute) in_job_allocation (NEDAS.job_submitters.hpc.HPCJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) increment (NEDAS.core.updator.Updator attribute) indent() (NEDAS.utils.progress.Formatter method) index2rs() (NEDAS.models.qg.fortran.emulator.netutils.Data_generator method) Inflation (class in NEDAS.core.inflation) inflation_def (NEDAS.config.config.Config attribute) inflation_func (NEDAS.core.context.Context attribute) info (NEDAS.core.state.State attribute) init_all_file_locks() (NEDAS.core.updator.Updator method) init_file_lock() (NEDAS.utils.parallel.Comm method) init_file_locks() (NEDAS.core.diag.Diagnostics method) init_from_file() (NEDAS.models.topaz.confmap.ConformalMapping class method) init_partitions() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.assimilator.Assimilator method) initial_condition() (in module NEDAS.models.vort2d.util) initialize() (NEDAS.models.qg.python.model.QGModel method) interactive (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) (NEDAS.utils.progress.Progress attribute) interp() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method)

interp_method (NEDAS.config.config.Config attribute) inv_weighted_normal_cdf() (in module NEDAS.utils.distribution) invert_pv() (NEDAS.models.qg.python.model.QGModel method) io (NEDAS.core.context.Context attribute) io_mode (NEDAS.config.config.Config attribute) (NEDAS.core.io_backend.IOBackend attribute) (NEDAS.core.model.Model attribute) (NEDAS.io_backends.offline.OfflineIO attribute) (NEDAS.io_backends.online.OnlineIO attribute) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) IOBackend (class in NEDAS.core.io_backend) ir_prod() (in module NEDAS.models.qg.python.spectral) ir_pwr() (in module NEDAS.models.qg.python.spectral) IrregularGrid (class in NEDAS.grid.grid_irregular) is_leaf() (NEDAS.utils.progress.Progress method) is_ncat() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) is_notebook (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) is_vector (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) iswet() (NEDAS.models.nextsim.v1.gmshlib.GmshBoundary method) iter (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) iversn (NEDAS.models.topaz.abfile.ABFileArchv property)

J

jacob() (in module NEDAS.models.qg.python.spectral) jdm (NEDAS.models.topaz.abfile.ABFile property) (NEDAS.models.topaz.abfile.AFile property) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) jerlv0 (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) job_array_index_name (NEDAS.job_submitters.hpc.HPCJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property)

job_submit (NEDAS.config.config.Config attribute) job_submit_cmd() (NEDAS.job_submitters.gricad.GricadJobSubmitter method) (NEDAS.job_submitters.oar.OARJobSubmitter method) JobSubmitter (class in NEDAS.core.job_submitter) jsub (NEDAS.core.context.Context attribute) jultodate() (in module NEDAS.models.topaz.time_format)

K

k (NEDAS.core.types.FieldRecord attribute) k_cut (NEDAS.models.qg.python.model.QGModel attribute) kapref (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) kdm (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) kf_max (NEDAS.models.qg.python.model.QGModel attribute)

kf_min (NEDAS.models.qg.python.model.QGModel attribute) kfactor (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute) kmax (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) (NEDAS.models.qg.python.model.QGModel attribute) (NEDAS.models.qg.python.qg_python_model.QGPythonModel attribute)

L

lake_data (NEDAS.grid.grid_2d_base.Grid2DBase property) land_data (NEDAS.grid.grid_2d_base.Grid2DBase property) laplacian() (in module NEDAS.utils.spatial_operation) layer2mode() (in module NEDAS.models.qg.python.strat) level (NEDAS.utils.progress.Progress property) levels (NEDAS.core.types.VarDesc attribute) limit_max() (in module NEDAS.models.nextsim.dg.dgLimit) limit_min() (in module NEDAS.models.nextsim.dg.dgLimit) limits() (in module NEDAS.models.topaz.v5.namelist) linear (NEDAS.models.qg.python.model.QGModel attribute) link_file() (NEDAS.core.file_system.FileSystem method) ll2gind() (NEDAS.models.topaz.confmap.ConformalMapping method) llgrid_xy() (NEDAS.grid.grid_2d_base.Grid2DBase method) load_memory() (NEDAS.core.dataset.Dataset method) (NEDAS.core.model.Model method) load_model_state() (NEDAS.schemes.filter.FilterAnalysisScheme method) load_ndarray() (NEDAS.core.io_backend.IOBackend method) load_obs() (NEDAS.schemes.filter.FilterAnalysisScheme method) load_perturb_data() (NEDAS.core.perturb.Perturbation method) lobs (NEDAS.core.obs.Obs attribute) lobs_post (NEDAS.core.obs.Obs attribute) lobs_prior (NEDAS.core.obs.Obs attribute) loc_sprd (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute)

local_analysis() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.ETKF.core.ETKFAssimilator method) (NEDAS.assim_tools.assimilators.ETKF.ETKFAssimilator method) (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator method) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator method) local_analysis_main() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core) localization_def (NEDAS.config.config.Config attribute) localization_funcs (NEDAS.core.context.Context attribute) localize_scale_fac (NEDAS.config.config.Config attribute) LocalJobSubmitter (class in NEDAS.job_submitters.local) log() (NEDAS.utils.progress.Progress method) log_event() (NEDAS.core.context.Context method) logger() (NEDAS.core.context.Context method) lonlat2sxy() (in module NEDAS.models.noresm.proj) lonlat2xy() (in module NEDAS.models.noresm.proj) lonlat_to_xyz() (in module NEDAS.models.nextsim.v1.gmshlib) Lorenz96Model (class in NEDAS.models.lorenz96) (class in NEDAS.models.lorenz96.lorenz96_model) lowpass_response() (in module NEDAS.utils.multiscale) lwrad_berliand() (in module NEDAS.datasets.ecmwf.atmos_utils) lwrad_budyko() (in module NEDAS.datasets.ecmwf.atmos_utils) Lx (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) Ly (NEDAS.grid.grid_2d_base.Grid2DBase attribute)

M

MacOSJobSubmitter (class in NEDAS.job_submitters.macos) main() (in module NEDAS.models.qg.fortran.bin2nc) (in module NEDAS.models.qg.fortran.run) (in module NEDAS.schemes.filter) (in module NEDAS.schemes.forecast) make_correlated_perturb() (NEDAS.core.perturb.PerturbField method) make_dir() (NEDAS.core.file_system.FileSystem method) make_filter() (in module NEDAS.models.qg.python.spectral) make_namelist() (in module NEDAS.models.nextsim.dg.namelist) make_unet_model() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) make_wind_perturb_from_press() (NEDAS.core.perturb.PerturbField method) map_proj (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) march() (in module NEDAS.models.qg.python.numerics) mask (NEDAS.core.model.Model attribute) (NEDAS.core.perturb.PerturbField attribute) (NEDAS.core.state_info.StateInfo attribute) (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) mask_file (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) max_dom (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) MAX_NNODES (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) MAX_NTASKS (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) MAX_OCEAN_SALN (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) MAX_OCEAN_TEMP (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) MAX_PPN (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) meanssh_file (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) mem_list (NEDAS.core.context.Context attribute) memory (NEDAS.core.dataset.Dataset attribute) (NEDAS.core.model.Model attribute) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) MeshElement (class in NEDAS.models.nextsim.v1.gmshlib) MeshPhysicalName (class in NEDAS.models.nextsim.v1.gmshlib) message (NEDAS.core.context.Context property) mfx (NEDAS.grid.grid_2d_base.Grid2DBase property) mfy (NEDAS.grid.grid_2d_base.Grid2DBase property) MIN_OCEAN_SALN (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) min_salin (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) MIN_SEAICE_CONC (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) mode2layer() (in module NEDAS.models.qg.python.strat) Model (class in NEDAS.core.model) model_code_dir (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) model_config_file (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) model_def (NEDAS.config.config.Config attribute) model_env (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) model_name (NEDAS.core.model.Model attribute) model_params (NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator.QGFortranModelEmulator attribute) (NEDAS.models.qg.fortran.emulator.QGFortranModelEmulator attribute) model_src (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) models (NEDAS.core.context.Context attribute) module NEDAS.assim_tools NEDAS.assim_tools.assimilators NEDAS.assim_tools.assimilators.batch NEDAS.assim_tools.assimilators.EAKF NEDAS.assim_tools.assimilators.EAKF.core NEDAS.assim_tools.assimilators.ETKF NEDAS.assim_tools.assimilators.ETKF.core NEDAS.assim_tools.assimilators.serial NEDAS.assim_tools.assimilators.TopazDEnKF NEDAS.assim_tools.assimilators.TopazDEnKF.core NEDAS.assim_tools.covariance NEDAS.assim_tools.covariance.ensemble NEDAS.assim_tools.covariance.static NEDAS.assim_tools.inflation NEDAS.assim_tools.inflation.multiplicative NEDAS.assim_tools.inflation.RTPP NEDAS.assim_tools.localization NEDAS.assim_tools.localization.correlation_based NEDAS.assim_tools.localization.distance_based NEDAS.assim_tools.transforms NEDAS.assim_tools.transforms.identity NEDAS.assim_tools.transforms.scale_bandpass NEDAS.assim_tools.updators NEDAS.assim_tools.updators.additive NEDAS.config.config NEDAS.config.parse_config NEDAS.core.assimilator NEDAS.core.context NEDAS.core.dataset NEDAS.core.diag NEDAS.core.file_system NEDAS.core.inflation NEDAS.core.io_backend NEDAS.core.job_submitter NEDAS.core.model NEDAS.core.obs NEDAS.core.obs_info NEDAS.core.perturb NEDAS.core.scheme NEDAS.core.state NEDAS.core.state_info NEDAS.core.transform NEDAS.core.types NEDAS.core.updator NEDAS.datasets NEDAS.datasets.cs2smos NEDAS.datasets.cs2smos.cs2smos_obs NEDAS.datasets.ecmwf NEDAS.datasets.ecmwf.atmos_utils NEDAS.datasets.ecmwf.era5 NEDAS.datasets.ecmwf.era5.era5data NEDAS.datasets.ecmwf.forecast NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data NEDAS.datasets.ifremer NEDAS.datasets.ifremer.argo NEDAS.datasets.ifremer.argo.argo_obs NEDAS.datasets.osisaf NEDAS.datasets.osisaf.ice_conc NEDAS.datasets.osisaf.ice_conc.ice_conc_obs NEDAS.datasets.osisaf.ice_drift NEDAS.datasets.osisaf.ice_drift.ice_drift_obs NEDAS.datasets.rgps NEDAS.datasets.rgps.rgps_obs NEDAS.datasets.rgps.utils NEDAS.datasets.synthetic NEDAS.datasets.synthetic.synthetic_obs NEDAS.datasets.topaz NEDAS.datasets.topaz.topaz_prep_obs NEDAS.datasets.topaz.uf_data NEDAS.datasets.vort2d NEDAS.datasets.vort2d.vort2d_obs NEDAS.diag NEDAS.diag.metrics NEDAS.diag.metrics.spectral NEDAS.diag.misc NEDAS.diag.misc.convert_output NEDAS.diag.misc.convert_output.convert_output NEDAS.diag.misc.state_bin2nc NEDAS.diag.plot NEDAS.diag.plot.analysis_increments NEDAS.diag.plot.ensemble_states NEDAS.diag.plot.observations NEDAS.grid.grid NEDAS.grid.grid_1d NEDAS.grid.grid_2d_base NEDAS.grid.grid_irregular NEDAS.grid.grid_regular NEDAS.io_backends NEDAS.io_backends.offline NEDAS.io_backends.online NEDAS.job_submitters.betzy NEDAS.job_submitters.gricad NEDAS.job_submitters.hpc NEDAS.job_submitters.local NEDAS.job_submitters.macos NEDAS.job_submitters.oar NEDAS.job_submitters.slurm NEDAS.models NEDAS.models.lorenz96 NEDAS.models.lorenz96.lorenz96_model NEDAS.models.nextsim NEDAS.models.nextsim.dg NEDAS.models.nextsim.dg.dgLimit NEDAS.models.nextsim.dg.forcing NEDAS.models.nextsim.dg.namelist NEDAS.models.nextsim.dg.nextsimdg_model NEDAS.models.nextsim.dg.perturb NEDAS.models.nextsim.dg.restart NEDAS.models.nextsim.dg.slicing_nc NEDAS.models.nextsim.v1 NEDAS.models.nextsim.v1.bin_io NEDAS.models.nextsim.v1.drift_utils NEDAS.models.nextsim.v1.gmshlib NEDAS.models.nextsim.v1.namelist NEDAS.models.nextsim.v1.nextsim_model NEDAS.models.noresm NEDAS.models.noresm.proj NEDAS.models.qg NEDAS.models.qg.fortran NEDAS.models.qg.fortran.bin2nc NEDAS.models.qg.fortran.emulator NEDAS.models.qg.fortran.emulator.netutils NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator NEDAS.models.qg.fortran.namelist NEDAS.models.qg.fortran.qg_fortran_model NEDAS.models.qg.fortran.run NEDAS.models.qg.fortran.util NEDAS.models.qg.python NEDAS.models.qg.python.model NEDAS.models.qg.python.numerics NEDAS.models.qg.python.qg_python_model NEDAS.models.qg.python.spectral NEDAS.models.qg.python.strat NEDAS.models.topaz NEDAS.models.topaz.abfile NEDAS.models.topaz.confmap NEDAS.models.topaz.model_grid NEDAS.models.topaz.time_format NEDAS.models.topaz.v4 NEDAS.models.topaz.v4.namelist NEDAS.models.topaz.v4.topaz4model NEDAS.models.topaz.v5 NEDAS.models.topaz.v5.cice_utils NEDAS.models.topaz.v5.namelist NEDAS.models.topaz.v5.postproc NEDAS.models.topaz.v5.topaz5model NEDAS.models.vort2d NEDAS.models.vort2d.util NEDAS.models.vort2d.vort2d_model NEDAS.models.wrf NEDAS.models.wrf.namelist NEDAS.models.wrf.restart_io NEDAS.models.wrf.wrf_model NEDAS.schemes NEDAS.schemes.filter NEDAS.schemes.forecast NEDAS.utils.conversion NEDAS.utils.distribution NEDAS.utils.fft_lib NEDAS.utils.graphics NEDAS.utils.multiscale NEDAS.utils.netcdf_lib NEDAS.utils.njit NEDAS.utils.parallel NEDAS.utils.progress NEDAS.utils.random_perturb NEDAS.utils.spatial_operation

monitor_job_queue() (NEDAS.utils.parallel.OfflineScheduler method) move_file() (NEDAS.core.file_system.FileSystem method) move_files_to_dir() (NEDAS.core.file_system.FileSystem method) mpi_ready (NEDAS.utils.parallel.Comm attribute) msal (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) msh_filename (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) MultiplicativeInflation (class in NEDAS.assim_tools.inflation.multiplicative)

N

n2drec (NEDAS.models.topaz.abfile.AFile property) name (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) namelist() (in module NEDAS.models.nextsim.v1.namelist) (in module NEDAS.models.qg.fortran.namelist) (in module NEDAS.models.topaz.v4.namelist) (in module NEDAS.models.topaz.v5.namelist) (in module NEDAS.models.wrf.namelist) nc_close() (in module NEDAS.utils.netcdf_lib) nc_open() (in module NEDAS.utils.netcdf_lib) nc_read_var() (in module NEDAS.utils.netcdf_lib) nc_write_var() (in module NEDAS.utils.netcdf_lib) ncat (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) NEDAS.assim_tools module NEDAS.assim_tools.assimilators module NEDAS.assim_tools.assimilators.batch module NEDAS.assim_tools.assimilators.EAKF module NEDAS.assim_tools.assimilators.EAKF.core module NEDAS.assim_tools.assimilators.ETKF module NEDAS.assim_tools.assimilators.ETKF.core module NEDAS.assim_tools.assimilators.serial module NEDAS.assim_tools.assimilators.TopazDEnKF module NEDAS.assim_tools.assimilators.TopazDEnKF.core module NEDAS.assim_tools.covariance module NEDAS.assim_tools.covariance.ensemble module NEDAS.assim_tools.covariance.static module NEDAS.assim_tools.inflation module NEDAS.assim_tools.inflation.multiplicative module NEDAS.assim_tools.inflation.RTPP module NEDAS.assim_tools.localization module NEDAS.assim_tools.localization.correlation_based module NEDAS.assim_tools.localization.distance_based module NEDAS.assim_tools.transforms module NEDAS.assim_tools.transforms.identity module NEDAS.assim_tools.transforms.scale_bandpass module NEDAS.assim_tools.updators module NEDAS.assim_tools.updators.additive module NEDAS.config.config module NEDAS.config.parse_config module NEDAS.core.assimilator module NEDAS.core.context module NEDAS.core.dataset module NEDAS.core.diag module NEDAS.core.file_system module NEDAS.core.inflation module NEDAS.core.io_backend module NEDAS.core.job_submitter module NEDAS.core.model module NEDAS.core.obs module NEDAS.core.obs_info module NEDAS.core.perturb module NEDAS.core.scheme module NEDAS.core.state module NEDAS.core.state_info module NEDAS.core.transform module NEDAS.core.types module NEDAS.core.updator module NEDAS.datasets module NEDAS.datasets.cs2smos module NEDAS.datasets.cs2smos.cs2smos_obs module NEDAS.datasets.ecmwf module NEDAS.datasets.ecmwf.atmos_utils module NEDAS.datasets.ecmwf.era5 module NEDAS.datasets.ecmwf.era5.era5data module NEDAS.datasets.ecmwf.forecast module NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data module NEDAS.datasets.ifremer module NEDAS.datasets.ifremer.argo module NEDAS.datasets.ifremer.argo.argo_obs module NEDAS.datasets.osisaf module NEDAS.datasets.osisaf.ice_conc module NEDAS.datasets.osisaf.ice_conc.ice_conc_obs module NEDAS.datasets.osisaf.ice_drift module NEDAS.datasets.osisaf.ice_drift.ice_drift_obs module NEDAS.datasets.rgps module NEDAS.datasets.rgps.rgps_obs module NEDAS.datasets.rgps.utils module NEDAS.datasets.synthetic module NEDAS.datasets.synthetic.synthetic_obs module NEDAS.datasets.topaz module NEDAS.datasets.topaz.topaz_prep_obs module NEDAS.datasets.topaz.uf_data module NEDAS.datasets.vort2d module NEDAS.datasets.vort2d.vort2d_obs module NEDAS.diag module NEDAS.diag.metrics module NEDAS.diag.metrics.spectral module NEDAS.diag.misc module NEDAS.diag.misc.convert_output module NEDAS.diag.misc.convert_output.convert_output module NEDAS.diag.misc.state_bin2nc module NEDAS.diag.plot module NEDAS.diag.plot.analysis_increments module NEDAS.diag.plot.ensemble_states module NEDAS.diag.plot.observations module NEDAS.grid.grid module NEDAS.grid.grid_1d module NEDAS.grid.grid_2d_base module NEDAS.grid.grid_irregular module NEDAS.grid.grid_regular module NEDAS.io_backends module NEDAS.io_backends.offline module NEDAS.io_backends.online module NEDAS.job_submitters.betzy module NEDAS.job_submitters.gricad module NEDAS.job_submitters.hpc module NEDAS.job_submitters.local module NEDAS.job_submitters.macos module NEDAS.job_submitters.oar module NEDAS.job_submitters.slurm module NEDAS.models module NEDAS.models.lorenz96 module

NEDAS.models.lorenz96.lorenz96_model module NEDAS.models.nextsim module NEDAS.models.nextsim.dg module NEDAS.models.nextsim.dg.dgLimit module NEDAS.models.nextsim.dg.forcing module NEDAS.models.nextsim.dg.namelist module NEDAS.models.nextsim.dg.nextsimdg_model module NEDAS.models.nextsim.dg.perturb module NEDAS.models.nextsim.dg.restart module NEDAS.models.nextsim.dg.slicing_nc module NEDAS.models.nextsim.v1 module NEDAS.models.nextsim.v1.bin_io module NEDAS.models.nextsim.v1.drift_utils module NEDAS.models.nextsim.v1.gmshlib module NEDAS.models.nextsim.v1.namelist module NEDAS.models.nextsim.v1.nextsim_model module NEDAS.models.noresm module NEDAS.models.noresm.proj module NEDAS.models.qg module NEDAS.models.qg.fortran module NEDAS.models.qg.fortran.bin2nc module NEDAS.models.qg.fortran.emulator module NEDAS.models.qg.fortran.emulator.netutils module NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator module NEDAS.models.qg.fortran.namelist module NEDAS.models.qg.fortran.qg_fortran_model module NEDAS.models.qg.fortran.run module NEDAS.models.qg.fortran.util module NEDAS.models.qg.python module NEDAS.models.qg.python.model module NEDAS.models.qg.python.numerics module NEDAS.models.qg.python.qg_python_model module NEDAS.models.qg.python.spectral module NEDAS.models.qg.python.strat module NEDAS.models.topaz module NEDAS.models.topaz.abfile module NEDAS.models.topaz.confmap module NEDAS.models.topaz.model_grid module NEDAS.models.topaz.time_format module NEDAS.models.topaz.v4 module NEDAS.models.topaz.v4.namelist module NEDAS.models.topaz.v4.topaz4model module NEDAS.models.topaz.v5 module NEDAS.models.topaz.v5.cice_utils module NEDAS.models.topaz.v5.namelist module NEDAS.models.topaz.v5.postproc module NEDAS.models.topaz.v5.topaz5model module NEDAS.models.vort2d module NEDAS.models.vort2d.util module NEDAS.models.vort2d.vort2d_model module NEDAS.models.wrf module NEDAS.models.wrf.namelist module NEDAS.models.wrf.restart_io module NEDAS.models.wrf.wrf_model module NEDAS.schemes module NEDAS.schemes.filter module NEDAS.schemes.forecast module NEDAS.utils.conversion module NEDAS.utils.distribution module NEDAS.utils.fft_lib module NEDAS.utils.graphics module NEDAS.utils.multiscale module NEDAS.utils.netcdf_lib module NEDAS.utils.njit module NEDAS.utils.parallel module NEDAS.utils.progress module NEDAS.utils.random_perturb module NEDAS.utils.spatial_operation module nens (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) network_type (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs attribute) (NEDAS.datasets.vort2d.Vort2DObs attribute) new_node() (NEDAS.utils.progress.Progress method) newtoold() (NEDAS.models.topaz.confmap.ConformalMapping method) next_time (NEDAS.core.context.Context property) nextsim_data_dir (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) nextsim_dir (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) nextsim_mesh_dir (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) NextsimDGModel (class in NEDAS.models.nextsim.dg) (class in NEDAS.models.nextsim.dg.nextsimdg_model) NextsimModel (class in NEDAS.models.nextsim.v1) (class in NEDAS.models.nextsim.v1.nextsim_model) nfld (NEDAS.core.perturb.Perturbation attribute) nhc_root (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) Nilayer (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) niter (NEDAS.config.config.Config attribute) nkx (NEDAS.models.qg.python.model.QGModel property) nky (NEDAS.models.qg.python.model.QGModel property) nlobs_max (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute) nnode (NEDAS.job_submitters.hpc.HPCJobSubmitter property) nnode_avail (NEDAS.job_submitters.hpc.HPCJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) nobs (NEDAS.core.types.ObsRecord attribute) (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) node (NEDAS.utils.progress.Progress property) node_list_avail (NEDAS.job_submitters.oar.OARJobSubmitter property) NorESM (class in NEDAS.models.noresm) norm_forcing (NEDAS.models.qg.python.model.QGModel attribute) normal_cdf() (in module NEDAS.utils.distribution) nproc (NEDAS.config.config.Config attribute) (NEDAS.core.job_submitter.JobSubmitter property) (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) nproc_avail (NEDAS.core.job_submitter.JobSubmitter property) (NEDAS.job_submitters.local.LocalJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) nproc_mem (NEDAS.config.config.Config attribute) nproc_per_run (NEDAS.core.model.Model attribute) nproc_per_util (NEDAS.core.model.Model attribute) nproc_rec (NEDAS.config.config.Config attribute) nproc_util (NEDAS.config.config.Config attribute) nsal (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) nscale (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass attribute) NUM_OBS_PER_LAYER (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) numeric_opt (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) nx (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_regular.RegularGrid attribute) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.qg.python.model.QGModel property) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) ny (NEDAS.grid.grid_regular.RegularGrid attribute) (NEDAS.models.qg.python.model.QGModel property) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) nz (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) (NEDAS.models.qg.python.model.QGModel attribute) (NEDAS.models.qg.python.qg_python_model.QGPythonModel attribute)

O

OARJobSubmitter (class in NEDAS.job_submitters.oar) Obs (class in NEDAS.core.obs) obs (NEDAS.core.context.Context attribute) obs_days (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) obs_def (NEDAS.config.config.Config attribute) obs_err_scale_fac (NEDAS.config.config.Config attribute) OBS_ERR_VAR (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) obs_file_dt (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) obs_increment() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) obs_increment_eakf() (in module NEDAS.assim_tools.assimilators.EAKF.core) obs_inds (NEDAS.core.obs.Obs attribute) obs_operator (NEDAS.core.dataset.Dataset attribute) obs_position (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) obs_post (NEDAS.core.obs.Obs attribute) obs_prior (NEDAS.core.obs.Obs attribute) obs_range (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs attribute) (NEDAS.datasets.vort2d.Vort2DObs attribute) obs_rec_list (NEDAS.core.obs.Obs attribute) obs_seq (NEDAS.core.obs.Obs attribute) obs_space_stats() (NEDAS.core.inflation.Inflation method) obs_time_scale (NEDAS.config.config.Config attribute) obs_time_steps (NEDAS.config.config.Config attribute) obs_window_max (NEDAS.core.types.ObsRecord attribute) obs_window_min (NEDAS.core.types.ObsRecord attribute) obs_x (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute)

obs_y (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) obs_z (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) ObsInfo (class in NEDAS.core.obs_info) ObsRecord (class in NEDAS.core.types) ocean_forcing_path (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) OfflineIO (class in NEDAS.io_backends.offline) OfflineScheduler (class in NEDAS.utils.parallel) offset (NEDAS.core.job_submitter.JobSubmitter property) offset_node (NEDAS.job_submitters.hpc.HPCJobSubmitter property) oldtonew() (NEDAS.models.topaz.confmap.ConformalMapping method) on_epoch_end() (NEDAS.models.qg.fortran.emulator.netutils.Data_generator method) ONEM (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) onem (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) ONEM (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) online_mode (NEDAS.core.scheme.Scheme attribute) OnlineIO (class in NEDAS.io_backends.online) open_file() (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) OsisafSeaIceConcObs (class in NEDAS.datasets.osisaf.ice_conc) (class in NEDAS.datasets.osisaf.ice_conc.ice_conc_obs) OsisafSeaIceDriftObs (class in NEDAS.datasets.osisaf.ice_drift) (class in NEDAS.datasets.osisaf.ice_drift.ice_drift_obs) other_opts (NEDAS.core.perturb.PerturbField attribute) output_dt (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) output_ens_mean() (NEDAS.core.state.State method) output_perturbed_fields() (NEDAS.core.perturb.Perturbation method) output_ref_z() (NEDAS.core.state.State method) output_state() (NEDAS.core.state.State method) overwrite_field() (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileRestart method)

P

pack_field_chunk() (NEDAS.core.state.State method) pack_local_obs_data() (NEDAS.core.obs.Obs method) pack_local_state_data() (NEDAS.core.state.State method) padding() (NEDAS.utils.progress.Formatter method) par_list (NEDAS.core.state.State attribute) parallel_io (NEDAS.utils.parallel.Comm attribute) parallel_mode (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) params (NEDAS.core.perturb.PerturbField attribute) parse_commands() (NEDAS.core.job_submitter.JobSubmitter method) (NEDAS.job_submitters.hpc.HPCJobSubmitter method) parse_config() (in module NEDAS.config.parse_config) parse_element_string() (in module NEDAS.models.nextsim.v1.gmshlib) parse_kwargs() (NEDAS.core.dataset.Dataset method) (NEDAS.core.model.Model method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) parse_perturb_opts() (NEDAS.core.perturb.PerturbField method) partition_grid() (NEDAS.core.assimilator.Assimilator method) partitions (NEDAS.core.state.State attribute) pattern_corr() (in module NEDAS.diag.metrics.spectral) perturb (NEDAS.config.config.Config attribute) (NEDAS.core.perturb.Perturbation attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) perturb() (NEDAS.schemes.filter.FilterAnalysisScheme method) perturb_forcing() (in module NEDAS.models.nextsim.dg.forcing) perturb_methods (NEDAS.core.perturb.PerturbField attribute) perturb_random_displace() (NEDAS.core.perturb.PerturbField method) perturb_random_gaussian() (NEDAS.core.perturb.PerturbField method) perturb_random_powerlaw() (NEDAS.core.perturb.PerturbField method) perturb_restart() (in module NEDAS.models.nextsim.dg.restart) perturb_type (NEDAS.core.perturb.PerturbField attribute) Perturbation (class in NEDAS.core.perturb) PerturbField (class in NEDAS.core.perturb) pi (NEDAS.models.qg.python.model.QGModel attribute) pid (NEDAS.config.config.Config attribute) pid_mem (NEDAS.config.config.Config attribute) pid_rec (NEDAS.config.config.Config attribute) pid_show (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) pivotp() (in module NEDAS.models.noresm.proj) (NEDAS.models.topaz.confmap.ConformalMapping method) plot_field() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) plot_land() (NEDAS.grid.grid_2d_base.Grid2DBase method) plot_scatter() (NEDAS.grid.grid_2d_base.Grid2DBase method) plot_vectors() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) points_in_polygon() (NEDAS.models.nextsim.v1.gmshlib.GmshBoundary static method) pole_dim (NEDAS.grid.grid_regular.RegularGrid attribute) pole_index (NEDAS.grid.grid_regular.RegularGrid attribute) pop() (NEDAS.utils.progress.Progress method) ports() (in module NEDAS.models.topaz.v5.namelist) pos (NEDAS.core.types.FieldRecord attribute) postprocess() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method) (NEDAS.schemes.filter.FilterAnalysisScheme method)

postprocess_native() (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) ppn (NEDAS.job_submitters.hpc.HPCJobSubmitter property) ppn_avail (NEDAS.job_submitters.hpc.HPCJobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) prepare_fields_storage() (NEDAS.core.io_backend.IOBackend method) (NEDAS.io_backends.offline.OfflineIO method) prepare_init_ensemble() (NEDAS.schemes.filter.FilterAnalysisScheme method) prepare_mask() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) prepare_obs() (NEDAS.core.obs.Obs method) prepare_obs_from_state() (NEDAS.core.obs.Obs method) prepare_perturb_dir() (NEDAS.core.perturb.Perturbation method) prepare_state() (NEDAS.core.state.State method) prepare_truth() (NEDAS.schemes.filter.FilterAnalysisScheme method) preprocess() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method) (NEDAS.schemes.filter.FilterAnalysisScheme method) pres_adjusted_wind_perturb() (in module NEDAS.models.nextsim.dg.perturb) prev_time (NEDAS.core.context.Context property) print_1p() (NEDAS.core.context.Context method) print_with_cache() (in module NEDAS.utils.progress) priver (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) Progress (class in NEDAS.utils.progress) progress (NEDAS.core.context.Context attribute) progress_bar() (NEDAS.utils.progress.Formatter method) progress_bar_width (NEDAS.config.config.Config attribute) proj (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) proj2dict() (in module NEDAS.utils.conversion) proj4 (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) proj_name (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) psi (NEDAS.models.qg.python.model.QGModel attribute) psi2temp() (in module NEDAS.models.qg.fortran.util) psi2u() (in module NEDAS.models.qg.fortran.util) psi2v() (in module NEDAS.models.qg.fortran.util) psi2zeta() (in module NEDAS.models.qg.fortran.util) psi_init_type (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) psi_o (NEDAS.models.qg.python.model.QGModel attribute) push() (NEDAS.utils.progress.Progress method) pwrspec2d() (in module NEDAS.diag.metrics.spectral) python_env (NEDAS.config.config.Config attribute)

Q

q (NEDAS.models.qg.python.model.QGModel attribute) q_o (NEDAS.models.qg.python.model.QGModel attribute) qd_angle (NEDAS.models.qg.python.model.QGModel attribute) QGFortranModel (class in NEDAS.models.qg.fortran) (class in NEDAS.models.qg.fortran.qg_fortran_model) QGFortranModelEmulator (class in NEDAS.models.qg.fortran.emulator) (class in NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator)

QGModel (class in NEDAS.models.qg.python.model) QGPythonModel (class in NEDAS.models.qg.python.qg_python_model) qsw0() (in module NEDAS.datasets.ecmwf.atmos_utils) qsw_allsky_rosato() (in module NEDAS.datasets.ecmwf.atmos_utils) quad_drag (NEDAS.models.qg.python.model.QGModel attribute) quiet (NEDAS.config.config.Config attribute)

R

R (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) ran() (in module NEDAS.models.qg.python.numerics) ran_reset() (in module NEDAS.models.qg.python.numerics) random_displacement() (in module NEDAS.utils.random_perturb) random_field_gaussian() (in module NEDAS.models.nextsim.dg.perturb) (in module NEDAS.utils.random_perturb) random_field_powerlaw() (in module NEDAS.utils.random_perturb) random_flow() (in module NEDAS.models.vort2d.util) random_grid() (NEDAS.grid.grid.Grid class method) (NEDAS.grid.grid_1d.Grid1D class method) random_rotation (NEDAS.assim_tools.assimilators.ETKF.core.ETKFAssimilator attribute) (NEDAS.assim_tools.assimilators.ETKF.ETKFAssimilator attribute) rankine_vortex() (in module NEDAS.models.vort2d.util) read_chunks() (in module NEDAS.models.wrf.restart_io) read_data() (in module NEDAS.models.nextsim.v1.bin_io) read_data_bin() (in module NEDAS.models.qg.fortran.util) read_data_from_grb() (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) read_elements() (in module NEDAS.models.nextsim.v1.gmshlib) read_field() (in module NEDAS.diag.misc.state_bin2nc) (NEDAS.core.io_backend.IOBackend method) (NEDAS.io_backends.offline.OfflineIO method) (NEDAS.io_backends.online.OnlineIO method) (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelax method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRmu method) read_field_info() (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelax method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRmu method) read_fields_bin() (in module NEDAS.models.wrf.restart_io) read_fields_nc() (in module NEDAS.models.wrf.restart_io) read_from_file() (NEDAS.core.state_info.StateInfo method) read_grid() (in module NEDAS.models.noresm) (NEDAS.core.model.Model method) (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method) read_grid_from_mshfile() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) read_header() (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelax method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRmu method) read_mask() (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) read_mshfile() (in module NEDAS.models.nextsim.v1.gmshlib) read_nodes() (in module NEDAS.models.nextsim.v1.gmshlib) read_obs() (NEDAS.core.dataset.Dataset method) read_obs_from_file() (NEDAS.core.dataset.Dataset method) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs method) (NEDAS.datasets.ifremer.argo.ArgoObs method) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs method) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs method) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs method) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs method) (NEDAS.datasets.synthetic.SyntheticObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) read_obs_from_memory() (NEDAS.core.dataset.Dataset method) read_param() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) read_physical_names() (in module NEDAS.models.nextsim.v1.gmshlib) read_record() (NEDAS.models.topaz.abfile.AFile method) read_regional_grid() (in module NEDAS.models.topaz.abfile) read_uf_data() (in module NEDAS.datasets.topaz.uf_data) read_var() (in module NEDAS.models.nextsim.dg.forcing) (in module NEDAS.models.nextsim.dg.restart) (in module NEDAS.models.noresm) (NEDAS.core.model.Model method) (NEDAS.datasets.ecmwf.era5.ERA5Data method) (NEDAS.datasets.ecmwf.era5.era5data.ERA5Data method) (NEDAS.datasets.ecmwf.forecast.ecmwf_forecast_data.EcmwfForecastData method) (NEDAS.datasets.ecmwf.forecast.EcmwfForecastData method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method)

read_var_from_file() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) read_var_from_memory() (NEDAS.core.model.Model method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) read_version_info() (in module NEDAS.models.nextsim.v1.gmshlib) readline() (NEDAS.models.topaz.abfile.ABFile method) reanalysis_code (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) rec_list (NEDAS.core.state.State attribute) records (NEDAS.core.obs_info.ObsInfo attribute) recv() (NEDAS.utils.parallel.DummyComm method) reduce() (NEDAS.utils.parallel.DummyComm method) ref_lat (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) ref_lon (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) refine() (in module NEDAS.utils.spatial_operation) regular (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) regular_grid() (NEDAS.grid.grid.Grid class method) (NEDAS.grid.grid_1d.Grid1D class method) RegularGrid (class in NEDAS.grid.grid_regular) relax (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) release_file_lock() (NEDAS.utils.parallel.Comm method) relhumid() (in module NEDAS.datasets.ecmwf.atmos_utils) remove_dir() (NEDAS.core.file_system.FileSystem method) remove_files() (NEDAS.core.file_system.FileSystem method) repeat_elem() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) residual_conv_block() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) resolution_level (NEDAS.config.config.Config attribute) restart_dir (NEDAS.core.model.Model attribute) restart_dt (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) (NEDAS.models.qg.python.qg_python_model.QGPythonModel attribute) (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) restart_input_path (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel attribute) (NEDAS.models.nextsim.v1.NextsimModel attribute) rfactor (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute) RgpsObs (class in NEDAS.datasets.rgps) (class in NEDAS.datasets.rgps.rgps_obs) rhs (NEDAS.models.qg.python.model.QGModel attribute) ring_integral() (in module NEDAS.models.qg.python.numerics) river_data (NEDAS.grid.grid_2d_base.Grid2DBase property) rmse() (in module NEDAS.diag.metrics.spectral) Rmw (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) robert (NEDAS.models.qg.python.model.QGModel attribute) rotate_vectors() (NEDAS.grid.grid_2d_base.Grid2DBase method) (NEDAS.grid.grid_regular.RegularGrid method) RTPPInflation (class in NEDAS.assim_tools.inflation.RTPP) run() (in module NEDAS.diag.misc.convert_output.convert_output) (in module NEDAS.diag.misc.state_bin2nc) (in module NEDAS.diag.plot.analysis_increments) (in module NEDAS.diag.plot.ensemble_states) (in module NEDAS.diag.plot.observations) (NEDAS.core.job_submitter.JobSubmitter method) (NEDAS.core.model.Model method) (NEDAS.job_submitters.hpc.HPCJobSubmitter method) (NEDAS.job_submitters.local.LocalJobSubmitter method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator.QGFortranModelEmulator method) (NEDAS.models.qg.fortran.emulator.QGFortranModelEmulator method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.model.QGModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method) run_1step_euler_forward() (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) run_1step_rk4() (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) run_all() (NEDAS.core.scheme.Scheme method) (NEDAS.schemes.filter.FilterAnalysisScheme method) (NEDAS.schemes.forecast.ForecastScheme method) run_analysis (NEDAS.config.config.Config attribute) run_batch() (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) run_diagnose (NEDAS.config.config.Config attribute) run_ensemble_tasks() (NEDAS.core.scheme.Scheme method) run_forecast (NEDAS.config.config.Config attribute) run_job() (NEDAS.core.context.Context method) run_job_as_step() (NEDAS.job_submitters.hpc.HPCJobSubmitter method) (NEDAS.job_submitters.oar.OARJobSubmitter method) run_postproc (NEDAS.config.config.Config attribute) run_preproc (NEDAS.config.config.Config attribute) run_process (NEDAS.core.model.Model attribute) run_separate_jobs (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) run_single() (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) run_status (NEDAS.core.model.Model attribute) run_step() (NEDAS.core.scheme.Scheme method)

S

s2t() (in module NEDAS.utils.conversion) SALN_MAX (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) SALN_MIN (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) saltmax (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) satvap() (in module NEDAS.datasets.ecmwf.atmos_utils) save_checkpoint (NEDAS.config.config.Config attribute) save_debug_data() (NEDAS.core.io_backend.IOBackend method) save_memory() (NEDAS.core.dataset.Dataset method) (NEDAS.core.model.Model method) save_model_state() (NEDAS.schemes.filter.FilterAnalysisScheme method) save_ndarray() (NEDAS.core.io_backend.IOBackend method) save_obs() (NEDAS.schemes.filter.FilterAnalysisScheme method) save_perturb_data() (NEDAS.core.perturb.Perturbation method) ScaleBandpass (class in NEDAS.assim_tools.transforms.scale_bandpass) scanitem() (NEDAS.models.topaz.abfile.ABFile method) scheduler (NEDAS.core.scheme.Scheme attribute) Scheme (class in NEDAS.core.scheme) scheme (NEDAS.config.config.Config attribute) seconds_to_timestr() (in module NEDAS.utils.conversion) seekrecord() (NEDAS.models.topaz.abfile.AFile method) send() (NEDAS.utils.parallel.DummyComm method) SerialAssimilator (class in NEDAS.assim_tools.assimilators.serial) set_comm() (NEDAS.core.context.Context method) set_datasets() (NEDAS.core.context.Context method) set_destination_grid() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_2d_base.Grid2DBase method) set_flag() (NEDAS.utils.progress.Progress method) set_grid() (NEDAS.core.context.Context method) set_logging() (NEDAS.core.context.Context method) set_models() (NEDAS.core.context.Context method) set_xylim() (NEDAS.grid.grid_2d_base.Grid2DBase method) setup_spectral_grid() (in module NEDAS.models.qg.python.spectral) shape (NEDAS.core.state_info.StateInfo attribute) shared_data (NEDAS.io_backends.online.OnlineIO attribute) sharpen_field() (in module NEDAS.utils.spatial_operation) show_greeting() (NEDAS.core.context.Context method) show_summary() (NEDAS.core.context.Context method) shuffle_obs (NEDAS.config.config.Config attribute) shutdown() (NEDAS.utils.parallel.OfflineScheduler method) size (NEDAS.core.state_info.StateInfo attribute) SLURMJobSubmitter (class in NEDAS.job_submitters.slurm) source (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute)

spec2grid() (in module NEDAS.models.qg.fortran.util) (in module NEDAS.models.qg.python.spectral) spec2grid_cc() (in module NEDAS.models.qg.python.spectral) spherdist() (in module NEDAS.models.noresm.proj) spinup_hours (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel attribute) (NEDAS.models.qg.fortran.QGFortranModel attribute) Split() (NEDAS.utils.parallel.DummyComm method) stagger() (in module NEDAS.models.topaz.model_grid) stagnant_log_timeout (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) start_queue() (NEDAS.utils.parallel.OfflineScheduler method) State (class in NEDAS.core.state) state (NEDAS.core.context.Context attribute) state_def (NEDAS.config.config.Config attribute) state_post (NEDAS.core.state.State attribute) state_prior (NEDAS.core.state.State attribute) state_time_scale (NEDAS.config.config.Config attribute) state_time_steps (NEDAS.config.config.Config attribute) state_to_obs() (NEDAS.core.obs.Obs method) state_z (NEDAS.core.state.State attribute) StateInfo (class in NEDAS.core.state_info) std (NEDAS.core.types.ErrorModel attribute) step (NEDAS.config.config.Config attribute) step() (NEDAS.models.qg.python.model.QGModel method) step_func() (in module NEDAS.assim_tools.localization.distance_based) steps_need_mpi (NEDAS.core.scheme.Scheme attribute) (NEDAS.schemes.filter.FilterAnalysisScheme attribute) stmt_fns_constans() (in module NEDAS.models.topaz.v5.postproc) stmt_fns_kappaf() (in module NEDAS.models.topaz.v5.postproc) stmt_fns_sigma() (in module NEDAS.models.topaz.v5.postproc) str2bool() (in module NEDAS.config.parse_config) strat_params() (in module NEDAS.models.qg.python.strat) strat_type (NEDAS.models.qg.python.model.QGModel attribute) strd_bignami() (in module NEDAS.datasets.ecmwf.atmos_utils) strd_efimova_jacobs() (in module NEDAS.datasets.ecmwf.atmos_utils) strd_maykut_jacobs() (in module NEDAS.datasets.ecmwf.atmos_utils) strip_ab_ending() (NEDAS.models.topaz.abfile.ABFile class method) strip_escape_code() (NEDAS.utils.progress.Formatter method) submit_job() (NEDAS.utils.parallel.OfflineScheduler method) submit_job_and_monitor() (NEDAS.job_submitters.hpc.HPCJobSubmitter method) (NEDAS.job_submitters.oar.OARJobSubmitter method) (NEDAS.job_submitters.slurm.SLURMJobSubmitter method) summary() (NEDAS.config.config.Config method) surface_bc (NEDAS.models.qg.python.model.QGModel attribute) sxy2lonlat() (in module NEDAS.models.noresm.proj) SyntheticObs (class in NEDAS.datasets.synthetic) (class in NEDAS.datasets.synthetic.synthetic_obs)

T

T (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) t2h() (in module NEDAS.utils.conversion) t2s() (in module NEDAS.utils.conversion) tabspace (NEDAS.config.config.Config attribute) tags (NEDAS.core.io_backend.IOBackend attribute) taper_boundary() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) task_list (NEDAS.core.diag.Diagnostics attribute) (NEDAS.core.perturb.Perturbation attribute) tcorr (NEDAS.core.types.ErrorModel attribute) temp2psi() (in module NEDAS.models.qg.fortran.util) TEMP_MAX (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) TEMP_MIN (NEDAS.datasets.ifremer.argo.argo_obs.ArgoObs attribute) (NEDAS.datasets.ifremer.argo.ArgoObs attribute) thbase (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) therm_drag (NEDAS.models.qg.python.model.QGModel attribute) thflag (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) thickness_upper_limit() (in module NEDAS.models.topaz.v5.cice_utils) thref (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) time (NEDAS.config.config.Config attribute) (NEDAS.core.context.Context attribute) (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.models.qg.python.model.QGModel attribute) time_analysis_end (NEDAS.config.config.Config attribute) time_analysis_start (NEDAS.config.config.Config attribute) time_end (NEDAS.config.config.Config attribute) time_start (NEDAS.config.config.Config attribute) timer (NEDAS.config.config.Config attribute) timer() (NEDAS.core.context.Context method)

top_drag (NEDAS.models.qg.python.model.QGModel attribute) Topaz4Model (class in NEDAS.models.topaz.v4) (class in NEDAS.models.topaz.v4.topaz4model) Topaz5Model (class in NEDAS.models.topaz.v5) (class in NEDAS.models.topaz.v5.topaz5model) TopazDEnKFAssimilator (class in NEDAS.assim_tools.assimilators.TopazDEnKF) (class in NEDAS.assim_tools.assimilators.TopazDEnKF.core) TopazPrepObs (class in NEDAS.datasets.topaz) (class in NEDAS.datasets.topaz.topaz_prep_obs) total_tasks (NEDAS.core.context.Context property) Transform (class in NEDAS.core.transform) transform_def (NEDAS.config.config.Config attribute) transform_ens_obs_backward() (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) transform_ens_obs_forward() (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) transform_ens_state_backward() (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) transform_ens_state_forward() (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) transform_funcs (NEDAS.core.context.Context attribute) transpose_chunks_to_fields() (in module NEDAS.models.wrf.restart_io) transpose_fields_to_chunks() (in module NEDAS.models.wrf.restart_io) transpose_obs_seq() (NEDAS.core.obs.Obs method) transpose_to_ensemble_complete() (NEDAS.core.assimilator.Assimilator method) (NEDAS.core.obs.Obs method) (NEDAS.core.state.State method) transpose_to_field_complete() (NEDAS.core.assimilator.Assimilator method) (NEDAS.core.obs.Obs method) (NEDAS.core.state.State method) tri_area() (in module NEDAS.models.noresm.proj) tridiag_cyc_vec() (in module NEDAS.models.qg.python.numerics) tridiag_vec() (in module NEDAS.models.qg.python.numerics) troi (NEDAS.core.types.ObsRecord attribute) truelat1 (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) truelat2 (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) truncate() (NEDAS.utils.progress.Formatter method) truth_dir (NEDAS.core.model.Model attribute) type (NEDAS.core.types.ErrorModel attribute)

U

units (NEDAS.core.types.FieldRecord attribute) (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) units_convert() (in module NEDAS.utils.conversion) unpack_field_chunk() (NEDAS.core.state.State method) unpack_local_obs_data() (NEDAS.core.obs.Obs method) unpack_local_state_data() (NEDAS.core.state.State method) update() (NEDAS.core.updator.Updator method) (NEDAS.utils.progress.Progress method) update_assim_tools() (NEDAS.core.context.Context method) update_ensemble() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_files() (NEDAS.assim_tools.updators.additive.AdditiveUpdator method) (NEDAS.core.updator.Updator method) update_local_obs() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) update_local_obs_linear() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_local_state() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method)

update_local_state_linear() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_node_file() (NEDAS.job_submitters.oar.OARJobSubmitter method) Updator (class in NEDAS.core.updator) updator (NEDAS.core.context.Context attribute) updator_def (NEDAS.config.config.Config attribute) upsample_block() (NEDAS.models.qg.fortran.emulator.netutils.Att_Res_UNet method) uscale (NEDAS.models.qg.python.model.QGModel attribute) use_dataset_uncertainty (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) use_forcing (NEDAS.models.qg.python.model.QGModel attribute) use_job_array (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) use_synthetic_obs (NEDAS.core.scheme.Scheme attribute) use_topo (NEDAS.models.qg.python.model.QGModel attribute) use_tracer (NEDAS.models.qg.python.model.QGModel attribute) uv2zeta() (in module NEDAS.models.qg.fortran.util)

V

V (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) validate_init_ensemble_data() (NEDAS.schemes.filter.FilterAnalysisScheme method) validate_obs_ens() (NEDAS.core.inflation.Inflation method) validate_seq_shape() (NEDAS.core.obs.Obs method) validate_tag() (NEDAS.core.io_backend.IOBackend method) validate_truth_data() (NEDAS.schemes.filter.FilterAnalysisScheme method) value_str() (in module NEDAS.models.nextsim.v1.namelist) (in module NEDAS.models.qg.fortran.namelist) vapmix() (in module NEDAS.datasets.ecmwf.atmos_utils) VarDesc (class in NEDAS.core.types) variables (NEDAS.core.dataset.Dataset attribute) (NEDAS.core.model.Model attribute) (NEDAS.core.obs_info.ObsInfo attribute) (NEDAS.core.state_info.StateInfo attribute) Vbg (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute)

vcorr (NEDAS.core.types.ErrorModel attribute) vertical_interp() (NEDAS.core.obs.Obs method) Vmax (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute) Vort2DModel (class in NEDAS.models.vort2d) (class in NEDAS.models.vort2d.vort2d_model) Vort2DObs (class in NEDAS.datasets.vort2d) (class in NEDAS.datasets.vort2d.vort2d_obs) vortex_intensity() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vortex_position() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vortex_size() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vroi (NEDAS.core.types.ObsRecord attribute) vscale (NEDAS.models.qg.python.model.QGModel attribute) Vslope (NEDAS.models.vort2d.vort2d_model.Vort2DModel attribute) (NEDAS.models.vort2d.Vort2DModel attribute)

W

walltime (NEDAS.core.model.Model attribute) warp() (in module NEDAS.utils.spatial_operation) watch_files() (in module NEDAS.utils.progress) watch_log() (in module NEDAS.utils.progress) weightfile (NEDAS.models.qg.fortran.emulator.qg_fortran_model_emulator.QGFortranModelEmulator attribute) (NEDAS.models.qg.fortran.emulator.QGFortranModelEmulator attribute) windstress() (in module NEDAS.datasets.ecmwf.atmos_utils) within_max_level() (NEDAS.utils.progress.Progress method) work_dir (NEDAS.config.config.Config attribute) wrap_cyclic() (NEDAS.grid.grid_1d.Grid1D method) WRFModel (class in NEDAS.models.wrf) (class in NEDAS.models.wrf.wrf_model) write() (NEDAS.models.nextsim.v1.gmshlib.MeshElement method) (NEDAS.models.nextsim.v1.gmshlib.MeshPhysicalName method) write_bathymetry() (in module NEDAS.models.topaz.abfile) write_bfile_info() (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileRestart method) write_chunks() (in module NEDAS.models.wrf.restart_io) write_data() (in module NEDAS.models.nextsim.v1.bin_io) write_data_bin() (in module NEDAS.models.qg.fortran.util) write_diag_nc() (in module NEDAS.models.topaz.abfile) write_elements() (in module NEDAS.models.nextsim.v1.gmshlib) write_field() (NEDAS.core.io_backend.IOBackend method) (NEDAS.io_backends.offline.OfflineIO method) (NEDAS.io_backends.online.OnlineIO method) (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRiver method) (NEDAS.models.topaz.abfile.ABFileRmu method) write_fields_bin() (in module NEDAS.models.wrf.restart_io) write_fields_nc() (in module NEDAS.models.wrf.restart_io) write_grid() (in module NEDAS.models.noresm) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) write_header() (NEDAS.models.topaz.abfile.ABFile method) (NEDAS.models.topaz.abfile.ABFileArchv method) (NEDAS.models.topaz.abfile.ABFileBathy method) (NEDAS.models.topaz.abfile.ABFileForcing method) (NEDAS.models.topaz.abfile.ABFileGrid method) (NEDAS.models.topaz.abfile.ABFileRelaxZ method) (NEDAS.models.topaz.abfile.ABFileRestart method) (NEDAS.models.topaz.abfile.ABFileRiver method) (NEDAS.models.topaz.abfile.ABFileRmu method)

write_mshfile() (in module NEDAS.models.nextsim.v1.gmshlib) write_nodes() (in module NEDAS.models.nextsim.v1.gmshlib) write_obs() (NEDAS.core.dataset.Dataset method) write_obs_to_file() (NEDAS.core.dataset.Dataset method) write_obs_to_memory() (NEDAS.core.dataset.Dataset method) write_param() (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) write_physical_names() (in module NEDAS.models.nextsim.v1.gmshlib) write_regional_grid() (in module NEDAS.models.topaz.abfile) write_to_file() (NEDAS.core.state_info.StateInfo method) write_var() (in module NEDAS.models.nextsim.dg.forcing) (in module NEDAS.models.nextsim.dg.restart) (in module NEDAS.models.noresm) (NEDAS.core.model.Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method) write_var_to_file() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) write_var_to_memory() (NEDAS.core.model.Model method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) write_version_info() (in module NEDAS.models.nextsim.v1.gmshlib) writeitem() (NEDAS.models.topaz.abfile.ABFile method) writerecord() (NEDAS.models.topaz.abfile.AFile method)

X

x (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_2d_base.Grid2DBase attribute) X (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) x_elem (NEDAS.grid.grid_2d_base.Grid2DBase attribute) xend (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute)

xstart (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute) xy2lonlat() (in module NEDAS.models.noresm.proj) xyz_to_lonlat() (in module NEDAS.models.nextsim.v1.gmshlib)

Y

y (NEDAS.grid.grid_2d_base.Grid2DBase attribute) y_elem (NEDAS.grid.grid_2d_base.Grid2DBase attribute) yend (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute)

yrflag (NEDAS.models.topaz.abfile.ABFileArchv property) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) ystart (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.datasets.osisaf.ice_conc.ice_conc_obs.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_conc.OsisafSeaIceConcObs attribute) (NEDAS.datasets.osisaf.ice_drift.ice_drift_obs.OsisafSeaIceDriftObs attribute) (NEDAS.datasets.osisaf.ice_drift.OsisafSeaIceDriftObs attribute) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel attribute) (NEDAS.models.nextsim.dg.NextsimDGModel attribute)

Z

z (NEDAS.core.model.Model attribute) z_coords() (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.lorenz96_model.Lorenz96Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.nextsim.dg.nextsimdg_model.NextsimDGModel method) (NEDAS.models.nextsim.dg.NextsimDGModel method) (NEDAS.models.nextsim.v1.nextsim_model.NextsimModel method) (NEDAS.models.nextsim.v1.NextsimModel method) (NEDAS.models.qg.fortran.qg_fortran_model.QGFortranModel method) (NEDAS.models.qg.fortran.QGFortranModel method) (NEDAS.models.qg.python.qg_python_model.QGPythonModel method) (NEDAS.models.topaz.v4.Topaz4Model method) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model method) (NEDAS.models.topaz.v5.Topaz5Model method) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model method) (NEDAS.models.vort2d.vort2d_model.Vort2DModel method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.wrf_model.WRFModel method) (NEDAS.models.wrf.WRFModel method)

z_coords_from (NEDAS.config.config.Config attribute) z_units (NEDAS.core.types.ObsRecord attribute) (NEDAS.core.types.VarDesc attribute) (NEDAS.models.topaz.v4.Topaz4Model attribute) (NEDAS.models.topaz.v4.topaz4model.Topaz4Model attribute) (NEDAS.models.topaz.v5.Topaz5Model attribute) (NEDAS.models.topaz.v5.topaz5model.Topaz5Model attribute) (NEDAS.models.wrf.wrf_model.WRFModel attribute) (NEDAS.models.wrf.WRFModel attribute) zeta2psi() (in module NEDAS.models.qg.fortran.util)