Index

A

Abort() (NEDAS.utils.parallel.DummyComm method) acquire_file_lock() (NEDAS.utils.parallel.Comm method) adaptive_post_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.Inflation method) (NEDAS.core.inflation.Inflation method) adaptive_prior_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.Inflation method) (NEDAS.core.inflation.Inflation method) add_colorbar() (in module NEDAS.utils.graphics) add_fields_for_variable() (NEDAS.core.state_info.StateInfo method) add_obs_record() (NEDAS.core.obs_info.ObsInfo method) AdditiveUpdator (class in NEDAS.assim_tools.updators.additive) adjust_ax_size() (in module NEDAS.utils.graphics) advance_time() (in module NEDAS.models.vort2d.util) alignment (NEDAS.config.config.Config attribute) AlignmentUpdator (class in NEDAS.assim_tools.updators.alignment) (class in NEDAS.assim_tools.updators.alignment_interp) allgather() (NEDAS.utils.parallel.DummyComm method) allreduce() (NEDAS.utils.parallel.DummyComm method) analysis_dir() (NEDAS.core.FileSystem method) anchor (NEDAS.config.config.Config attribute) apply_ensemble_transform() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core)

apply_inflation() (NEDAS.assim_tools.inflation.multiplicative.MultiplicativeInflation method) (NEDAS.assim_tools.inflation.RTPP.RTPPInflation method) (NEDAS.core.Inflation method) (NEDAS.core.inflation.Inflation method) arrowhead_xy() (in module NEDAS.utils.graphics) asdict() (NEDAS.core.types.ErrorModel method) (NEDAS.core.types.FieldRecord method) (NEDAS.core.types.ObsRecord method) (NEDAS.core.types.VarDesc method) assign_obs() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) assign_obs_to_tiles() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) assimilate() (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) assimilation_algorithm() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) Assimilator (class in NEDAS.core) (class in NEDAS.core.assimilator) assimilator (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) assimilator_def (NEDAS.config.config.Config attribute)

B

backward_obs() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.Transform method) (NEDAS.core.transform.Transform method) backward_state() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.Transform method) (NEDAS.core.transform.Transform method)

Barrier() (NEDAS.utils.parallel.DummyComm method) BatchAssimilator (class in NEDAS.assim_tools.assimilators.batch) bcast() (NEDAS.utils.parallel.DummyComm method) bcast_by_root() (in module NEDAS.utils.parallel) bool_str() (in module NEDAS.models.wrf.namelist) by_rank() (in module NEDAS.utils.parallel)

C

c (NEDAS.core.Dataset property) (NEDAS.core.dataset.Dataset property) (NEDAS.core.Model property) (NEDAS.core.model.Model property) (NEDAS.core.Scheme property) (NEDAS.core.scheme.Scheme property) call_method() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) call_stack (NEDAS.config.config.Config attribute) (NEDAS.utils.progress.Progress attribute) call_stack_max_level (NEDAS.config.config.Config attribute) (NEDAS.utils.progress.Progress attribute) change_resolution_level() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) character_length (NEDAS.config.config.Config attribute) check_cycle_complete() (NEDAS.schemes.filter.FilterAnalysisScheme method) check_interactive() (NEDAS.core.Context method) (NEDAS.core.context.Context method) check_job_status() (NEDAS.job_submitters.oar.OARJobSubmitter method) check_notebook() (NEDAS.core.Context method) (NEDAS.core.context.Context method) check_parallel_io() (NEDAS.utils.parallel.Comm method) cleanup_file_locks() (NEDAS.utils.parallel.Comm method) coarsen() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) (in module NEDAS.utils.spatial_operation) (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) coarsen_field() (in module NEDAS.utils.spatial_operation) coarsen_mask() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) (in module NEDAS.utils.spatial_operation) collect_fields() (NEDAS.core.Perturbation method) collect_obs_seq() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) collect_prior_fields() (NEDAS.core.State method) (NEDAS.core.state.State method)

collect_scalar_variables() (NEDAS.core.State method) (NEDAS.core.state.State method) cols (NEDAS.config.config.Config attribute) Comm (class in NEDAS.utils.parallel) comm (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) comm_mem (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) comm_rec (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) complete_err_cross_corr_matrix() (NEDAS.core.obs_info.ObsInfo method) compute_covariance() (NEDAS.assim_tools.covariance.ensemble.EnsembleCovariance method) compute_increment() (NEDAS.assim_tools.updators.additive.AdditiveUpdator method) (NEDAS.assim_tools.updators.alignment.AlignmentUpdator method) (NEDAS.assim_tools.updators.alignment_interp.AlignmentUpdator method) (NEDAS.core.Updator method) (NEDAS.core.updator.Updator method) Config (class in NEDAS.config.config) config (NEDAS.core.FileSystem attribute) (NEDAS.core.Scheme attribute) (NEDAS.core.scheme.Scheme attribute) Context (class in NEDAS.core) (class in NEDAS.core.context) convert() (NEDAS.grid.grid_1d.Grid1D method) convert_notation() (in module NEDAS.config.parse_config) convolve() (in module NEDAS.utils.multiscale) copy_file() (NEDAS.core.FileSystem method) count_lines_in_file() (in module NEDAS.utils.progress) count_num_fields() (NEDAS.core.Perturbation method) covariance_def (NEDAS.config.config.Config attribute) covariance_lookup() (in module NEDAS.assim_tools.covariance.ensemble) cross_corr (NEDAS.core.types.ErrorModel attribute), [1] Cs2SmosObs (class in NEDAS.datasets.cs2smos) (class in NEDAS.datasets.cs2smos.cs2smos_obs) current_task (NEDAS.core.Context property) (NEDAS.core.context.Context property) cycle_dir() (NEDAS.core.FileSystem method) cycle_period (NEDAS.config.config.Config attribute) cyclic (NEDAS.grid.grid_1d.Grid1D attribute)

D

data (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) Dataset (class in NEDAS.core) (class in NEDAS.core.dataset) dataset_def (NEDAS.config.config.Config attribute) dataset_dir (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) dataset_name (NEDAS.core.Dataset attribute) (NEDAS.core.dataset.Dataset attribute) dataset_src (NEDAS.core.types.ObsRecord attribute), [1] datasets (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) DAYS_SEARCH_TOLERANCE (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) debug (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) (NEDAS.utils.progress.Progress attribute) debug_message (NEDAS.core.Context property) (NEDAS.core.context.Context property) decompose_obs (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass attribute) DEFORM_ERR_STD (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) DEFORM_MAX (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) deriv_x() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) deriv_y() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) diag (NEDAS.config.config.Config attribute) diagnose() (NEDAS.schemes.filter.FilterAnalysisScheme method) Diagnostics (class in NEDAS.core) dimmer() (NEDAS.utils.progress.Formatter method) directories (NEDAS.config.config.Config attribute) displace (NEDAS.assim_tools.updators.alignment.AlignmentUpdator attribute) (NEDAS.assim_tools.updators.alignment_interp.AlignmentUpdator attribute) diss (NEDAS.models.vort2d.Vort2DModel attribute) distance() (NEDAS.grid.grid_1d.Grid1D method)

distribute_diag_tasks() (NEDAS.core.Diagnostics method) distribute_mem_tasks() (NEDAS.core.Context method) (NEDAS.core.context.Context method) distribute_obs_tasks() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) distribute_partitions() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) distribute_perturb_tasks() (NEDAS.core.Perturbation method) distribute_state_tasks() (NEDAS.core.State method) (NEDAS.core.state.State method) distribute_tasks() (in module NEDAS.utils.parallel) draw_line() (in module NEDAS.utils.graphics) draw_patch() (in module NEDAS.utils.graphics) draw_reference_vector_legend() (in module NEDAS.utils.graphics) DRIFT_ERR_STD (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) DRIFT_MAX (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) dst_grid (NEDAS.grid.grid_1d.Grid1D property) dt (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.vort2d.Vort2DModel attribute) dtype (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) DummyComm (class in NEDAS.utils.parallel) dump_config() (NEDAS.core.Context method) (NEDAS.core.context.Context method) dump_yaml() (NEDAS.config.config.Config method) dx (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.models.vort2d.Vort2DModel attribute) (NEDAS.models.wrf.WRFModel attribute) dy (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) (NEDAS.models.wrf.WRFModel attribute)

E

e_sn (NEDAS.models.wrf.WRFModel attribute) e_vert (NEDAS.models.wrf.WRFModel attribute) e_we (NEDAS.models.wrf.WRFModel attribute) EAKFAssimilator (class in NEDAS.assim_tools.assimilators.EAKF), [1] (class in NEDAS.assim_tools.assimilators.EAKF.core) ens_init_dir (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) ens_run_strategy (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) ensemble_covariance() (in module NEDAS.assim_tools.covariance.ensemble) ensemble_forecast() (NEDAS.schemes.filter.FilterAnalysisScheme method) ensemble_transform_weights() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core) EnsembleCovariance (class in NEDAS.assim_tools.covariance.ensemble)

ensure_list() (in module NEDAS.utils.conversion) err (NEDAS.core.types.ObsRecord attribute), [1] err_type (NEDAS.core.types.FieldRecord attribute), [1] err_types (NEDAS.core.obs_info.ObsInfo attribute), [1] (NEDAS.core.state_info.StateInfo attribute), [1] ErrorModel (class in NEDAS.core.types) ETKFAssimilator (class in NEDAS.assim_tools.assimilators.ETKF), [1] (class in NEDAS.assim_tools.assimilators.ETKF.core) execute_command (NEDAS.core.JobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) exponential_func() (in module NEDAS.assim_tools.localization.distance_based) external_call() (NEDAS.core.Scheme method) (NEDAS.core.scheme.Scheme method)

F

F (NEDAS.models.lorenz96.Lorenz96Model attribute) fft2() (in module NEDAS.utils.fft_lib) fftwn() (in module NEDAS.utils.fft_lib) FieldRecord (class in NEDAS.core.types) fields (NEDAS.core.state_info.StateInfo attribute), [1] fields_post (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) fields_prior (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) fields_z (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) filename() (in module NEDAS.models.noresm) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method) FileSystem (class in NEDAS.core) filter() (NEDAS.schemes.filter.FilterAnalysisScheme method) filter_iter() (NEDAS.schemes.filter.FilterAnalysisScheme method)

FilterAnalysisScheme (class in NEDAS.schemes.filter) finalize() (NEDAS.utils.parallel.Comm method) find_grid_index() (in module NEDAS.models.noresm.proj) find_index() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) find_keyword_in_file() (in module NEDAS.utils.progress) forcing() (in module NEDAS.models.vort2d.util) forecast_dir() (NEDAS.core.FileSystem method) forecast_period (NEDAS.config.config.Config attribute) (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) Formatter (class in NEDAS.utils.progress) formatter (NEDAS.utils.progress.Progress attribute) forward_obs() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.Transform method) (NEDAS.core.transform.Transform method) forward_state() (NEDAS.assim_tools.transforms.identity.Identity method) (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass method) (NEDAS.core.Transform method) (NEDAS.core.transform.Transform method) fs (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute)

G

gaspari_cohn_func() (in module NEDAS.assim_tools.localization.distance_based) gather() (NEDAS.utils.parallel.DummyComm method) gaussian() (in module NEDAS.utils.random_perturb) gen (NEDAS.models.vort2d.Vort2DModel attribute) generate_init_ensemble() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) generate_initial_condition() (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) generate_obs_network() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs method) (NEDAS.datasets.synthetic.SyntheticObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) generate_truth() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) get_cmap() (in module NEDAS.utils.graphics) get_cols() (NEDAS.core.Context method) (NEDAS.core.context.Context method) get_corners() (NEDAS.grid.grid_regular.RegularGrid method) get_covariance() (in module NEDAS.assim_tools.covariance) get_data_traj_pairs() (in module NEDAS.datasets.rgps.utils) get_dataset_class() (in module NEDAS.datasets) get_deform_div() (in module NEDAS.datasets.rgps.utils) get_deform_shear() (in module NEDAS.datasets.rgps.utils) get_deform_vort() (in module NEDAS.datasets.rgps.utils) get_error_scale_factor() (in module NEDAS.utils.multiscale) get_inflation_func() (in module NEDAS.assim_tools.inflation) get_io_backend() (in module NEDAS.io_backends) get_job_id() (NEDAS.job_submitters.oar.OARJobSubmitter method) get_localization_funcs() (in module NEDAS.assim_tools.localization) get_model_files() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_model_fld_z_on_grid() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) get_mstr() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) Get_rank() (NEDAS.utils.parallel.DummyComm method) get_ref_z() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) get_restart_dir() (NEDAS.schemes.filter.FilterAnalysisScheme method) get_scale_component() (in module NEDAS.utils.multiscale) get_scale_component_convolve() (in module NEDAS.utils.multiscale) get_scale_component_spec_bandpass() (in module NEDAS.utils.multiscale)

get_scaled_wn() (in module NEDAS.models.vort2d.util) get_scheme() (in module NEDAS) get_seaice_deform_div() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_deform_shear() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_deform_vort() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_seaice_drift() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) get_sig_in_gaussian() (in module NEDAS.utils.random_perturb) Get_size() (NEDAS.utils.parallel.DummyComm method) get_task_opts() (NEDAS.schemes.filter.FilterAnalysisScheme method) get_timer_msg() (NEDAS.utils.progress.Progress method) get_traj_pairs() (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) get_transform_funcs() (in module NEDAS.assim_tools.transforms) get_triangulation() (in module NEDAS.datasets.rgps.utils) get_tstr() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) get_updator() (in module NEDAS.assim_tools.updators) get_velocity() (in module NEDAS.datasets.rgps.utils) (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_velocity_from_press() (in module NEDAS.utils.random_perturb) get_velocity_gradients() (in module NEDAS.datasets.rgps.utils) get_vortex_intensity() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_vortex_position() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_vortex_size() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) get_wn() (in module NEDAS.utils.fft_lib) global_obs_list() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) gradx() (in module NEDAS.utils.spatial_operation) gradx2() (in module NEDAS.utils.spatial_operation) gradxy() (in module NEDAS.utils.spatial_operation) grady() (in module NEDAS.utils.spatial_operation) grady2() (in module NEDAS.utils.spatial_operation) Grid (class in NEDAS.grid.grid) grid (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) Grid1D (class in NEDAS.grid.grid_1d) grid_def (NEDAS.config.config.Config attribute) grid_info() (in module NEDAS.models.noresm) grid_orig (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute)

H

h2t() (in module NEDAS.utils.conversion) hcorr (NEDAS.core.types.ErrorModel attribute), [1]

horizontal_interp() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) hroi (NEDAS.core.types.ObsRecord attribute)

I

Identity (class in NEDAS.assim_tools.transforms.identity) ifft2() (in module NEDAS.utils.fft_lib) impact_on_state (NEDAS.core.types.ObsRecord attribute) in_job_allocation (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) increment (NEDAS.core.Updator attribute) (NEDAS.core.updator.Updator attribute) indent() (NEDAS.utils.progress.Formatter method) Inflation (class in NEDAS.core) (class in NEDAS.core.inflation) inflation_def (NEDAS.config.config.Config attribute) inflation_func (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) info (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) init_all_file_locks() (NEDAS.core.Updator method) (NEDAS.core.updator.Updator method) init_file_lock() (NEDAS.utils.parallel.Comm method) init_file_locks() (NEDAS.core.Diagnostics method) init_partitions() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) initial_condition() (in module NEDAS.models.vort2d.util) interactive (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) (NEDAS.utils.progress.Progress attribute)

interp() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) interp2d() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) interp_method (NEDAS.config.config.Config attribute) io (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) io_mode (NEDAS.config.config.Config attribute) (NEDAS.core.io_backend.IOBackend attribute), [1] (NEDAS.core.IOBackend attribute), [1] (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) IOBackend (class in NEDAS.core) (class in NEDAS.core.io_backend) IrregularGrid (class in NEDAS.grid.grid_irregular) is_leaf() (NEDAS.utils.progress.Progress method) is_notebook (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) is_vector (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) iter (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute)

J

job_array_index_name (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) job_submit (NEDAS.config.config.Config attribute)

job_submit_cmd() (NEDAS.job_submitters.oar.OARJobSubmitter method) JobSubmitter (class in NEDAS.core) jsub (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute)

K

k (NEDAS.core.types.FieldRecord attribute), [1]

kfactor (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute), [1]

L

laplacian() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) (in module NEDAS.utils.spatial_operation) level (NEDAS.utils.progress.Progress property) levels (NEDAS.core.types.VarDesc attribute) link_file() (NEDAS.core.FileSystem method) load_memory() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) load_model_state() (NEDAS.schemes.filter.FilterAnalysisScheme method) load_ndarray() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) load_obs() (NEDAS.schemes.filter.FilterAnalysisScheme method) load_perturb_data() (NEDAS.core.Perturbation method) lobs (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) lobs_post (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) lobs_prior (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute)

loc_sprd (NEDAS.models.vort2d.Vort2DModel attribute) local_analysis() (NEDAS.assim_tools.assimilators.batch.BatchAssimilator method) (NEDAS.assim_tools.assimilators.ETKF.core.ETKFAssimilator method) (NEDAS.assim_tools.assimilators.ETKF.ETKFAssimilator method), [1] (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator method) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator method), [1] local_analysis_main() (in module NEDAS.assim_tools.assimilators.ETKF.core) (in module NEDAS.assim_tools.assimilators.TopazDEnKF.core) localization_def (NEDAS.config.config.Config attribute) localization_funcs (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) localize_scale_fac (NEDAS.config.config.Config attribute) log() (NEDAS.utils.progress.Progress method) log_event() (NEDAS.core.Context method) (NEDAS.core.context.Context method) logger() (NEDAS.core.Context method) (NEDAS.core.context.Context method) lonlat2sxy() (in module NEDAS.models.noresm.proj) lonlat2xy() (in module NEDAS.models.noresm.proj) Lorenz96Model (class in NEDAS.models.lorenz96) lowpass_response() (in module NEDAS.utils.multiscale) Lx (NEDAS.grid.grid_1d.Grid1D attribute)

M

main() (in module NEDAS.schemes.filter) make_dir() (NEDAS.core.FileSystem method) map_proj (NEDAS.models.wrf.WRFModel attribute) mask (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) (NEDAS.core.state_info.StateInfo attribute) (NEDAS.grid.grid_1d.Grid1D attribute) max_dom (NEDAS.models.wrf.WRFModel attribute) MAX_NNODES (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) MAX_NTASKS (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) MAX_PPN (NEDAS.job_submitters.slurm.SLURMJobSubmitter attribute) mem_list (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) memory (NEDAS.core.Dataset attribute) (NEDAS.core.dataset.Dataset attribute) (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.vort2d.Vort2DModel attribute) message (NEDAS.core.Context property) (NEDAS.core.context.Context property) Model (class in NEDAS.core) (class in NEDAS.core.model) model_code_dir (NEDAS.models.wrf.WRFModel attribute) model_def (NEDAS.config.config.Config attribute) model_name (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) model_src (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] models (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) module NEDAS NEDAS.assim_tools.assimilators.batch NEDAS.assim_tools.assimilators.EAKF, [1] NEDAS.assim_tools.assimilators.EAKF.core NEDAS.assim_tools.assimilators.ETKF, [1] NEDAS.assim_tools.assimilators.ETKF.core NEDAS.assim_tools.assimilators.serial NEDAS.assim_tools.assimilators.TopazDEnKF, [1] NEDAS.assim_tools.assimilators.TopazDEnKF.core NEDAS.assim_tools.covariance NEDAS.assim_tools.covariance.ensemble NEDAS.assim_tools.covariance.static NEDAS.assim_tools.inflation NEDAS.assim_tools.inflation.multiplicative NEDAS.assim_tools.inflation.RTPP NEDAS.assim_tools.localization NEDAS.assim_tools.localization.distance_based NEDAS.assim_tools.transforms NEDAS.assim_tools.transforms.identity NEDAS.assim_tools.transforms.scale_bandpass NEDAS.assim_tools.updators NEDAS.assim_tools.updators.additive NEDAS.assim_tools.updators.alignment NEDAS.assim_tools.updators.alignment_interp NEDAS.config.config NEDAS.config.parse_config NEDAS.core NEDAS.core.assimilator NEDAS.core.context NEDAS.core.dataset NEDAS.core.inflation NEDAS.core.io_backend NEDAS.core.model NEDAS.core.obs NEDAS.core.obs_info NEDAS.core.scheme NEDAS.core.state NEDAS.core.state_info NEDAS.core.transform NEDAS.core.types NEDAS.core.updator NEDAS.datasets NEDAS.datasets.cs2smos NEDAS.datasets.cs2smos.cs2smos_obs NEDAS.datasets.rgps NEDAS.datasets.rgps.rgps_obs NEDAS.datasets.rgps.utils NEDAS.datasets.synthetic NEDAS.datasets.synthetic.synthetic_obs NEDAS.datasets.topaz NEDAS.datasets.topaz.topaz_prep_obs NEDAS.datasets.topaz.uf_data NEDAS.datasets.vort2d NEDAS.datasets.vort2d.vort2d_obs NEDAS.diag NEDAS.grid.grid NEDAS.grid.grid_1d NEDAS.grid.grid_irregular NEDAS.grid.grid_regular NEDAS.io_backends NEDAS.job_submitters.get_job_submitter NEDAS.job_submitters.oar NEDAS.job_submitters.slurm NEDAS.models.lorenz96 NEDAS.models.noresm NEDAS.models.noresm.proj NEDAS.models.qg NEDAS.models.vort2d NEDAS.models.vort2d.util NEDAS.models.wrf NEDAS.models.wrf.namelist NEDAS.models.wrf.restart_io NEDAS.schemes.filter NEDAS.schemes.get_scheme NEDAS.utils.conversion NEDAS.utils.fft_lib NEDAS.utils.graphics NEDAS.utils.multiscale NEDAS.utils.netcdf_lib NEDAS.utils.njit NEDAS.utils.parallel NEDAS.utils.progress NEDAS.utils.random_perturb NEDAS.utils.spatial_operation

monitor_job_queue() (NEDAS.utils.parallel.OfflineScheduler method) move_file() (NEDAS.core.FileSystem method) move_files_to_dir() (NEDAS.core.FileSystem method) mpi_ready (NEDAS.utils.parallel.Comm attribute) MultiplicativeInflation (class in NEDAS.assim_tools.inflation.multiplicative)

N

name (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) namelist() (in module NEDAS.models.wrf.namelist) nc_close() (in module NEDAS.utils.netcdf_lib) nc_open() (in module NEDAS.utils.netcdf_lib) nc_read_var() (in module NEDAS.utils.netcdf_lib) nc_write_var() (in module NEDAS.utils.netcdf_lib) NEDAS module NEDAS.assim_tools.assimilators.batch module NEDAS.assim_tools.assimilators.EAKF module, [1] NEDAS.assim_tools.assimilators.EAKF.core module NEDAS.assim_tools.assimilators.ETKF module, [1] NEDAS.assim_tools.assimilators.ETKF.core module NEDAS.assim_tools.assimilators.serial module NEDAS.assim_tools.assimilators.TopazDEnKF module, [1] NEDAS.assim_tools.assimilators.TopazDEnKF.core module NEDAS.assim_tools.covariance module NEDAS.assim_tools.covariance.ensemble module NEDAS.assim_tools.covariance.static module NEDAS.assim_tools.inflation module NEDAS.assim_tools.inflation.multiplicative module NEDAS.assim_tools.inflation.RTPP module NEDAS.assim_tools.localization module NEDAS.assim_tools.localization.distance_based module NEDAS.assim_tools.transforms module NEDAS.assim_tools.transforms.identity module NEDAS.assim_tools.transforms.scale_bandpass module NEDAS.assim_tools.updators module NEDAS.assim_tools.updators.additive module NEDAS.assim_tools.updators.alignment module NEDAS.assim_tools.updators.alignment_interp module NEDAS.config.config module NEDAS.config.parse_config module NEDAS.core module NEDAS.core.assimilator module NEDAS.core.context module NEDAS.core.dataset module NEDAS.core.inflation module NEDAS.core.io_backend module NEDAS.core.model module NEDAS.core.obs module NEDAS.core.obs_info module NEDAS.core.scheme module NEDAS.core.state module NEDAS.core.state_info module NEDAS.core.transform module NEDAS.core.types module NEDAS.core.updator module NEDAS.datasets module NEDAS.datasets.cs2smos module NEDAS.datasets.cs2smos.cs2smos_obs module NEDAS.datasets.rgps module NEDAS.datasets.rgps.rgps_obs module NEDAS.datasets.rgps.utils module NEDAS.datasets.synthetic module NEDAS.datasets.synthetic.synthetic_obs module

NEDAS.datasets.topaz module NEDAS.datasets.topaz.topaz_prep_obs module NEDAS.datasets.topaz.uf_data module NEDAS.datasets.vort2d module NEDAS.datasets.vort2d.vort2d_obs module NEDAS.diag module NEDAS.grid.grid module NEDAS.grid.grid_1d module NEDAS.grid.grid_irregular module NEDAS.grid.grid_regular module NEDAS.io_backends module NEDAS.job_submitters.get_job_submitter module NEDAS.job_submitters.oar module NEDAS.job_submitters.slurm module NEDAS.models.lorenz96 module NEDAS.models.noresm module NEDAS.models.noresm.proj module NEDAS.models.qg module NEDAS.models.vort2d module NEDAS.models.vort2d.util module NEDAS.models.wrf module NEDAS.models.wrf.namelist module NEDAS.models.wrf.restart_io module NEDAS.schemes.filter module NEDAS.schemes.get_scheme module NEDAS.utils.conversion module NEDAS.utils.fft_lib module NEDAS.utils.graphics module NEDAS.utils.multiscale module NEDAS.utils.netcdf_lib module NEDAS.utils.njit module NEDAS.utils.parallel module NEDAS.utils.progress module NEDAS.utils.random_perturb module NEDAS.utils.spatial_operation module nens (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) new_node() (NEDAS.utils.progress.Progress method) next_time (NEDAS.core.Context property) (NEDAS.core.context.Context property) nfld (NEDAS.core.Perturbation attribute) niter (NEDAS.config.config.Config attribute) nlobs_max (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute), [1] nnode_avail (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) nobs (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) node (NEDAS.utils.progress.Progress property) node_list_avail (NEDAS.job_submitters.oar.OARJobSubmitter property) NorESM (class in NEDAS.models.noresm) nproc (NEDAS.config.config.Config attribute) (NEDAS.core.JobSubmitter property) nproc_avail (NEDAS.core.JobSubmitter property) (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) nproc_mem (NEDAS.config.config.Config attribute) nproc_per_run (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) nproc_per_util (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) nproc_rec (NEDAS.config.config.Config attribute) nproc_util (NEDAS.config.config.Config attribute) nscale (NEDAS.assim_tools.transforms.scale_bandpass.ScaleBandpass attribute) nx (NEDAS.grid.grid_1d.Grid1D attribute) (NEDAS.grid.grid_regular.RegularGrid attribute) (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.vort2d.Vort2DModel attribute) ny (NEDAS.grid.grid_regular.RegularGrid attribute) (NEDAS.models.vort2d.Vort2DModel attribute)

O

OARJobSubmitter (class in NEDAS.job_submitters.oar) Obs (class in NEDAS.core) (class in NEDAS.core.obs) obs (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) obs_days (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) obs_def (NEDAS.config.config.Config attribute) obs_err_scale_fac (NEDAS.config.config.Config attribute) obs_file_dt (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) obs_increment() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method), [1] (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) obs_increment_eakf() (in module NEDAS.assim_tools.assimilators.EAKF.core) obs_inds (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) obs_operator (NEDAS.core.Dataset attribute) (NEDAS.core.dataset.Dataset attribute) obs_position (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) obs_post (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) obs_prior (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) obs_rec_list (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute) obs_seq (NEDAS.core.Obs attribute) (NEDAS.core.obs.Obs attribute)

obs_space_stats() (NEDAS.core.Inflation method) (NEDAS.core.inflation.Inflation method) obs_time_scale (NEDAS.config.config.Config attribute) obs_time_steps (NEDAS.config.config.Config attribute) obs_window_max (NEDAS.core.types.ObsRecord attribute), [1] obs_window_min (NEDAS.core.types.ObsRecord attribute), [1] obs_x (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) obs_y (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) obs_z (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs attribute) (NEDAS.datasets.synthetic.SyntheticObs attribute) ObsInfo (class in NEDAS.core.obs_info) ObsRecord (class in NEDAS.core.types) OfflineScheduler (class in NEDAS.utils.parallel) offset (NEDAS.core.JobSubmitter property) online_mode (NEDAS.core.Scheme attribute) (NEDAS.core.scheme.Scheme attribute) optical_flow() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) output_ens_mean() (NEDAS.core.State method) (NEDAS.core.state.State method) output_perturbed_fields() (NEDAS.core.Perturbation method) output_ref_z() (NEDAS.core.State method) (NEDAS.core.state.State method) output_state() (NEDAS.core.State method) (NEDAS.core.state.State method)

P

pack_field_chunk() (NEDAS.core.State method) (NEDAS.core.state.State method) pack_local_obs_data() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) pack_local_state_data() (NEDAS.core.State method) (NEDAS.core.state.State method) padding() (NEDAS.utils.progress.Formatter method) par_list (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) parallel_io (NEDAS.utils.parallel.Comm attribute), [1] parse_commands() (NEDAS.core.JobSubmitter method) parse_config() (in module NEDAS.config.parse_config) parse_kwargs() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) partition_grid() (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) partitions (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) perturb (NEDAS.config.config.Config attribute) (NEDAS.core.Perturbation attribute) perturb() (NEDAS.schemes.filter.FilterAnalysisScheme method) Perturbation (class in NEDAS.core) pid (NEDAS.config.config.Config attribute) pid_mem (NEDAS.config.config.Config attribute) pid_rec (NEDAS.config.config.Config attribute) pid_show (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) pivotp() (in module NEDAS.models.noresm.proj) plot_field() (NEDAS.grid.grid_1d.Grid1D method) (NEDAS.grid.grid_irregular.IrregularGrid method) (NEDAS.grid.grid_regular.RegularGrid method) plot_vectors() (NEDAS.grid.grid_1d.Grid1D method) pole_dim (NEDAS.grid.grid_regular.RegularGrid attribute) pole_index (NEDAS.grid.grid_regular.RegularGrid attribute) pop() (NEDAS.utils.progress.Progress method) pos (NEDAS.core.types.FieldRecord attribute), [1]

postprocess() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method) (NEDAS.schemes.filter.FilterAnalysisScheme method) ppn_avail (NEDAS.job_submitters.oar.OARJobSubmitter property) (NEDAS.job_submitters.slurm.SLURMJobSubmitter property) prepare_fields_storage() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) prepare_init_ensemble() (NEDAS.schemes.filter.FilterAnalysisScheme method) prepare_obs() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) prepare_obs_from_state() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) prepare_perturb_dir() (NEDAS.core.Perturbation method) prepare_state() (NEDAS.core.State method) (NEDAS.core.state.State method) prepare_truth() (NEDAS.schemes.filter.FilterAnalysisScheme method) preprocess() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method) (NEDAS.schemes.filter.FilterAnalysisScheme method) prev_time (NEDAS.core.Context property) (NEDAS.core.context.Context property) print_1p() (NEDAS.core.Context method) (NEDAS.core.context.Context method) print_with_cache() (in module NEDAS.utils.progress) Progress (class in NEDAS.utils.progress) progress (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) progress_bar() (NEDAS.utils.progress.Formatter method) progress_bar_width (NEDAS.config.config.Config attribute) proj (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) proj2dict() (in module NEDAS.utils.conversion) proj4 (NEDAS.datasets.rgps.rgps_obs.RgpsObs attribute) (NEDAS.datasets.rgps.RgpsObs attribute) push() (NEDAS.utils.progress.Progress method) python_env (NEDAS.config.config.Config attribute)

Q

quiet (NEDAS.config.config.Config attribute)

R

random_displacement() (in module NEDAS.utils.random_perturb) random_field_gaussian() (in module NEDAS.utils.random_perturb) random_field_powerlaw() (in module NEDAS.utils.random_perturb) random_flow() (in module NEDAS.models.vort2d.util) random_grid() (NEDAS.grid.grid.Grid class method) (NEDAS.grid.grid_1d.Grid1D class method) rankine_vortex() (in module NEDAS.models.vort2d.util) read_chunks() (in module NEDAS.models.wrf.restart_io) read_field() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) read_fields_bin() (in module NEDAS.models.wrf.restart_io) read_fields_nc() (in module NEDAS.models.wrf.restart_io) read_from_file() (NEDAS.core.state_info.StateInfo method) read_grid() (in module NEDAS.models.noresm) (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method) read_mask() (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) read_obs() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) read_obs_from_file() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs method) (NEDAS.datasets.cs2smos.Cs2SmosObs method) (NEDAS.datasets.rgps.rgps_obs.RgpsObs method) (NEDAS.datasets.rgps.RgpsObs method) (NEDAS.datasets.synthetic.synthetic_obs.SyntheticObs method) (NEDAS.datasets.synthetic.SyntheticObs method) (NEDAS.datasets.topaz.topaz_prep_obs.TopazPrepObs method) (NEDAS.datasets.topaz.TopazPrepObs method) read_obs_from_memory() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) read_uf_data() (in module NEDAS.datasets.topaz.uf_data) read_var() (in module NEDAS.models.noresm) (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.wrf.WRFModel method) read_var_from_file() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) read_var_from_memory() (NEDAS.core.Model method) (NEDAS.core.model.Model method) rec_list (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) records (NEDAS.core.obs_info.ObsInfo attribute), [1]

recv() (NEDAS.utils.parallel.DummyComm method) reduce() (NEDAS.utils.parallel.DummyComm method) ref_lat (NEDAS.models.wrf.WRFModel attribute) ref_lon (NEDAS.models.wrf.WRFModel attribute) refine() (in module NEDAS.utils.spatial_operation) regular (NEDAS.grid.grid_1d.Grid1D attribute) regular_grid() (NEDAS.grid.grid.Grid class method) (NEDAS.grid.grid_1d.Grid1D class method) RegularGrid (class in NEDAS.grid.grid_regular) release_file_lock() (NEDAS.utils.parallel.Comm method) remove_dir() (NEDAS.core.FileSystem method) remove_files() (NEDAS.core.FileSystem method) resolution_level (NEDAS.config.config.Config attribute) restart_dir (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) restart_dt (NEDAS.models.lorenz96.Lorenz96Model attribute) (NEDAS.models.vort2d.Vort2DModel attribute) (NEDAS.models.wrf.WRFModel attribute) rfactor (NEDAS.assim_tools.assimilators.TopazDEnKF.core.TopazDEnKFAssimilator attribute) (NEDAS.assim_tools.assimilators.TopazDEnKF.TopazDEnKFAssimilator attribute), [1] RgpsObs (class in NEDAS.datasets.rgps) (class in NEDAS.datasets.rgps.rgps_obs) Rmw (NEDAS.models.vort2d.Vort2DModel attribute) rotate_vectors() (NEDAS.grid.grid_regular.RegularGrid method) RTPPInflation (class in NEDAS.assim_tools.inflation.RTPP) run() (NEDAS.core.JobSubmitter method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method) run_all() (NEDAS.core.Scheme method) (NEDAS.core.scheme.Scheme method) (NEDAS.schemes.filter.FilterAnalysisScheme method) run_analysis (NEDAS.config.config.Config attribute) run_diagnose (NEDAS.config.config.Config attribute) run_ensemble_tasks() (NEDAS.core.Scheme method) (NEDAS.core.scheme.Scheme method) run_forecast (NEDAS.config.config.Config attribute) run_job() (NEDAS.core.Context method) (NEDAS.core.context.Context method) run_job_as_step() (NEDAS.job_submitters.oar.OARJobSubmitter method) run_postproc (NEDAS.config.config.Config attribute) run_preproc (NEDAS.config.config.Config attribute) run_process (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) run_status (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) run_step() (NEDAS.core.Scheme method) (NEDAS.core.scheme.Scheme method)

S

s2t() (in module NEDAS.utils.conversion) save_debug_data() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) save_memory() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) (NEDAS.core.Model method) (NEDAS.core.model.Model method) save_model_state() (NEDAS.schemes.filter.FilterAnalysisScheme method) save_ndarray() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) save_obs() (NEDAS.schemes.filter.FilterAnalysisScheme method) save_perturb_data() (NEDAS.core.Perturbation method) ScaleBandpass (class in NEDAS.assim_tools.transforms.scale_bandpass) scheduler (NEDAS.core.Scheme attribute) (NEDAS.core.scheme.Scheme attribute) Scheme (class in NEDAS.core) (class in NEDAS.core.scheme) scheme (NEDAS.config.config.Config attribute) seconds_to_timestr() (in module NEDAS.utils.conversion) send() (NEDAS.utils.parallel.DummyComm method) SerialAssimilator (class in NEDAS.assim_tools.assimilators.serial) set_comm() (NEDAS.core.Context method) (NEDAS.core.context.Context method) set_datasets() (NEDAS.core.Context method) (NEDAS.core.context.Context method) set_destination_grid() (NEDAS.grid.grid_1d.Grid1D method) set_flag() (NEDAS.utils.progress.Progress method) set_grid() (NEDAS.core.Context method) (NEDAS.core.context.Context method) set_logging() (NEDAS.core.Context method) (NEDAS.core.context.Context method) set_models() (NEDAS.core.Context method) (NEDAS.core.context.Context method) shape (NEDAS.core.state_info.StateInfo attribute), [1] sharpen() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) sharpen_field() (in module NEDAS.utils.spatial_operation) show_greeting() (NEDAS.core.Context method) (NEDAS.core.context.Context method)

show_summary() (NEDAS.core.Context method) (NEDAS.core.context.Context method) shuffle_obs (NEDAS.config.config.Config attribute) shutdown() (NEDAS.utils.parallel.OfflineScheduler method) size (NEDAS.core.state_info.StateInfo attribute), [1] SLURMJobSubmitter (class in NEDAS.job_submitters.slurm) spherdist() (in module NEDAS.models.noresm.proj) Split() (NEDAS.utils.parallel.DummyComm method) start_queue() (NEDAS.utils.parallel.OfflineScheduler method) State (class in NEDAS.core) (class in NEDAS.core.state) state (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) state_def (NEDAS.config.config.Config attribute) state_post (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) state_prior (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) state_time_scale (NEDAS.config.config.Config attribute) state_time_steps (NEDAS.config.config.Config attribute) state_to_obs() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) state_z (NEDAS.core.State attribute) (NEDAS.core.state.State attribute) StateInfo (class in NEDAS.core.state_info) std (NEDAS.core.types.ErrorModel attribute), [1] step (NEDAS.config.config.Config attribute) step_func() (in module NEDAS.assim_tools.localization.distance_based) steps_need_mpi (NEDAS.core.Scheme attribute) (NEDAS.core.scheme.Scheme attribute) (NEDAS.schemes.filter.FilterAnalysisScheme attribute) str2bool() (in module NEDAS.config.parse_config) strip_escape_code() (NEDAS.utils.progress.Formatter method) submit_job() (NEDAS.utils.parallel.OfflineScheduler method) submit_job_and_monitor() (NEDAS.job_submitters.oar.OARJobSubmitter method) (NEDAS.job_submitters.slurm.SLURMJobSubmitter method) summary() (NEDAS.config.config.Config method) sxy2lonlat() (in module NEDAS.models.noresm.proj) SyntheticObs (class in NEDAS.datasets.synthetic) (class in NEDAS.datasets.synthetic.synthetic_obs)

T

t2h() (in module NEDAS.utils.conversion) t2s() (in module NEDAS.utils.conversion) tabspace (NEDAS.config.config.Config attribute) tags (NEDAS.core.io_backend.IOBackend attribute), [1] (NEDAS.core.IOBackend attribute), [1] task_list (NEDAS.core.Diagnostics attribute) (NEDAS.core.Perturbation attribute) tcorr (NEDAS.core.types.ErrorModel attribute), [1] time (NEDAS.config.config.Config attribute) (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] time_analysis_end (NEDAS.config.config.Config attribute) time_analysis_start (NEDAS.config.config.Config attribute) time_end (NEDAS.config.config.Config attribute) time_start (NEDAS.config.config.Config attribute) timer (NEDAS.config.config.Config attribute) timer() (NEDAS.core.Context method) (NEDAS.core.context.Context method) TopazDEnKFAssimilator (class in NEDAS.assim_tools.assimilators.TopazDEnKF), [1] (class in NEDAS.assim_tools.assimilators.TopazDEnKF.core) TopazPrepObs (class in NEDAS.datasets.topaz) (class in NEDAS.datasets.topaz.topaz_prep_obs) total_tasks (NEDAS.core.Context property) (NEDAS.core.context.Context property) Transform (class in NEDAS.core) (class in NEDAS.core.transform)

transform_def (NEDAS.config.config.Config attribute) transform_funcs (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) transpose_chunks_to_fields() (in module NEDAS.models.wrf.restart_io) transpose_fields_to_chunks() (in module NEDAS.models.wrf.restart_io) transpose_obs_seq() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) transpose_to_ensemble_complete() (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) (NEDAS.core.State method) (NEDAS.core.state.State method) transpose_to_field_complete() (NEDAS.core.Assimilator method) (NEDAS.core.assimilator.Assimilator method) (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) (NEDAS.core.State method) (NEDAS.core.state.State method) tri_area() (in module NEDAS.models.noresm.proj) troi (NEDAS.core.types.ObsRecord attribute) truelat1 (NEDAS.models.wrf.WRFModel attribute) truelat2 (NEDAS.models.wrf.WRFModel attribute) truncate() (NEDAS.utils.progress.Formatter method) truth_dir (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) type (NEDAS.core.types.ErrorModel attribute), [1]

U

units (NEDAS.core.types.FieldRecord attribute), [1] (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) units_convert() (in module NEDAS.utils.conversion) unpack_field_chunk() (NEDAS.core.State method) (NEDAS.core.state.State method) unpack_local_obs_data() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) unpack_local_state_data() (NEDAS.core.State method) (NEDAS.core.state.State method) update() (NEDAS.core.Updator method) (NEDAS.core.updator.Updator method) (NEDAS.utils.progress.Progress method) update_assim_tools() (NEDAS.core.Context method) (NEDAS.core.context.Context method) update_ensemble() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_files() (NEDAS.assim_tools.updators.additive.AdditiveUpdator method) (NEDAS.assim_tools.updators.alignment.AlignmentUpdator method) (NEDAS.assim_tools.updators.alignment_interp.AlignmentUpdator method) (NEDAS.core.Updator method) (NEDAS.core.updator.Updator method)

update_local_obs() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method), [1] (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) update_local_obs_linear() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_local_state() (NEDAS.assim_tools.assimilators.EAKF.core.EAKFAssimilator method) (NEDAS.assim_tools.assimilators.EAKF.EAKFAssimilator method), [1] (NEDAS.assim_tools.assimilators.serial.SerialAssimilator method) update_local_state_linear() (in module NEDAS.assim_tools.assimilators.EAKF.core) update_node_file() (NEDAS.job_submitters.oar.OARJobSubmitter method) Updator (class in NEDAS.core) (class in NEDAS.core.updator) updator (NEDAS.core.Context attribute) (NEDAS.core.context.Context attribute) updator_def (NEDAS.config.config.Config attribute) use_dataset_uncertainty (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) use_synthetic_obs (NEDAS.core.Scheme attribute) (NEDAS.core.scheme.Scheme attribute)

V

validate_init_ensemble_data() (NEDAS.schemes.filter.FilterAnalysisScheme method) validate_obs_ens() (NEDAS.core.Inflation method) (NEDAS.core.inflation.Inflation method) validate_seq_shape() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) validate_tag() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) validate_truth_data() (NEDAS.schemes.filter.FilterAnalysisScheme method) VarDesc (class in NEDAS.core.types) variables (NEDAS.core.Dataset attribute) (NEDAS.core.dataset.Dataset attribute) (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) (NEDAS.core.obs_info.ObsInfo attribute), [1] (NEDAS.core.state_info.StateInfo attribute), [1]

Vbg (NEDAS.models.vort2d.Vort2DModel attribute) vcorr (NEDAS.core.types.ErrorModel attribute), [1] vertical_interp() (NEDAS.core.Obs method) (NEDAS.core.obs.Obs method) Vmax (NEDAS.models.vort2d.Vort2DModel attribute) Vort2DModel (class in NEDAS.models.vort2d) Vort2DObs (class in NEDAS.datasets.vort2d) (class in NEDAS.datasets.vort2d.vort2d_obs) vortex_intensity() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vortex_position() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vortex_size() (NEDAS.datasets.vort2d.vort2d_obs.Vort2DObs method) (NEDAS.datasets.vort2d.Vort2DObs method) vroi (NEDAS.core.types.ObsRecord attribute) Vslope (NEDAS.models.vort2d.Vort2DModel attribute)

W

walltime (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) warp() (in module NEDAS.assim_tools.updators.alignment) (in module NEDAS.assim_tools.updators.alignment_interp) (in module NEDAS.utils.spatial_operation) watch_files() (in module NEDAS.utils.progress) watch_log() (in module NEDAS.utils.progress) within_max_level() (NEDAS.utils.progress.Progress method) work_dir (NEDAS.config.config.Config attribute) wrap_cyclic() (NEDAS.grid.grid_1d.Grid1D method) WRFModel (class in NEDAS.models.wrf) write_chunks() (in module NEDAS.models.wrf.restart_io) write_field() (NEDAS.core.io_backend.IOBackend method) (NEDAS.core.IOBackend method) write_fields_bin() (in module NEDAS.models.wrf.restart_io) write_fields_nc() (in module NEDAS.models.wrf.restart_io) write_grid() (in module NEDAS.models.noresm)

write_obs() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) write_obs_to_file() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) write_obs_to_memory() (NEDAS.core.Dataset method) (NEDAS.core.dataset.Dataset method) write_to_file() (NEDAS.core.state_info.StateInfo method) write_var() (in module NEDAS.models.noresm) (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.wrf.WRFModel method) write_var_to_file() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) write_var_to_memory() (NEDAS.core.Model method) (NEDAS.core.model.Model method)

X

x (NEDAS.grid.grid_1d.Grid1D attribute) xend (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute)

xstart (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute) xy2lonlat() (in module NEDAS.models.noresm.proj)

Y

yend (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute)

ystart (NEDAS.datasets.cs2smos.cs2smos_obs.Cs2SmosObs attribute) (NEDAS.datasets.cs2smos.Cs2SmosObs attribute)

Z

z (NEDAS.core.Model attribute) (NEDAS.core.model.Model attribute) z_coords() (NEDAS.core.Model method) (NEDAS.core.model.Model method) (NEDAS.models.lorenz96.Lorenz96Model method) (NEDAS.models.vort2d.Vort2DModel method) (NEDAS.models.wrf.WRFModel method)

z_coords_from (NEDAS.config.config.Config attribute) z_units (NEDAS.core.types.ObsRecord attribute), [1] (NEDAS.core.types.VarDesc attribute) (NEDAS.models.wrf.WRFModel attribute)